miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12948 3' -60.3 NC_003387.1 + 33814 0.66 0.465627
Target:  5'- aGGCGcagggcaucccGCUGgGCAAgauCCCGA-GCCUGAu -3'
miRNA:   3'- gCCGC-----------CGACgUGUU---GGGCUaCGGGCU- -5'
12948 3' -60.3 NC_003387.1 + 44507 0.66 0.465627
Target:  5'- aCGGCaGUUGCGucuguuCGugCCGGgccGCCCGGc -3'
miRNA:   3'- -GCCGcCGACGU------GUugGGCUa--CGGGCU- -5'
12948 3' -60.3 NC_003387.1 + 33766 0.66 0.465627
Target:  5'- aCGGCGGC-GcCGCGAgCgGuuugGCCCGGc -3'
miRNA:   3'- -GCCGCCGaC-GUGUUgGgCua--CGGGCU- -5'
12948 3' -60.3 NC_003387.1 + 15510 0.66 0.45981
Target:  5'- aCGGCGGCguuuaugaGCACcGCCUgcugcacgcgcucggGGUGCCgGGc -3'
miRNA:   3'- -GCCGCCGa-------CGUGuUGGG---------------CUACGGgCU- -5'
12948 3' -60.3 NC_003387.1 + 17722 0.66 0.455954
Target:  5'- aGGCGG-UGCGC--CCCG--GCCCGGc -3'
miRNA:   3'- gCCGCCgACGUGuuGGGCuaCGGGCU- -5'
12948 3' -60.3 NC_003387.1 + 36699 0.66 0.455954
Target:  5'- gGGCaaGCUGaaucuCGACCCGGucgagcUGCCCGGc -3'
miRNA:   3'- gCCGc-CGACgu---GUUGGGCU------ACGGGCU- -5'
12948 3' -60.3 NC_003387.1 + 49189 0.66 0.455954
Target:  5'- gCGGCGGCcgucgacguUGCugAGCCCGcaacggaucUGCCgGu -3'
miRNA:   3'- -GCCGCCG---------ACGugUUGGGCu--------ACGGgCu -5'
12948 3' -60.3 NC_003387.1 + 22697 0.66 0.455953
Target:  5'- aCGGCGGC-GCugGCGGCCUGGgcgauaCCGAc -3'
miRNA:   3'- -GCCGCCGaCG--UGUUGGGCUacg---GGCU- -5'
12948 3' -60.3 NC_003387.1 + 6401 0.66 0.455953
Target:  5'- gGGCGGCcccgcuUGCccuucccaGCGGCCCGcUGCgCCGc -3'
miRNA:   3'- gCCGCCG------ACG--------UGUUGGGCuACG-GGCu -5'
12948 3' -60.3 NC_003387.1 + 45775 0.66 0.44639
Target:  5'- uGGCGccugcccgccGCUGCGCAgGCCgCGAUGauggCCGAc -3'
miRNA:   3'- gCCGC----------CGACGUGU-UGG-GCUACg---GGCU- -5'
12948 3' -60.3 NC_003387.1 + 24399 0.66 0.44639
Target:  5'- cCGGCaGGCugaucUGCAC-GCCCGcgauaccgagggGUGCCCa- -3'
miRNA:   3'- -GCCG-CCG-----ACGUGuUGGGC------------UACGGGcu -5'
12948 3' -60.3 NC_003387.1 + 27921 0.66 0.44639
Target:  5'- cCGGCGGCgUGgGCGcCUCGGgggggGCUCGGu -3'
miRNA:   3'- -GCCGCCG-ACgUGUuGGGCUa----CGGGCU- -5'
12948 3' -60.3 NC_003387.1 + 4072 0.66 0.44544
Target:  5'- aCGGCGuGCggguucugccgcaUGCucGCGACCCGcgGCgCCGu -3'
miRNA:   3'- -GCCGC-CG-------------ACG--UGUUGGGCuaCG-GGCu -5'
12948 3' -60.3 NC_003387.1 + 45872 0.66 0.44544
Target:  5'- -uGCGGCUGCGCGccgcgGCCgagcgggCGAUcgaccuccGCCCGAu -3'
miRNA:   3'- gcCGCCGACGUGU-----UGG-------GCUA--------CGGGCU- -5'
12948 3' -60.3 NC_003387.1 + 34814 0.66 0.440705
Target:  5'- aGGCguuggGGCUGCGCAucuucuacuACCCGAacauugaggggcugcUGCCgUGAg -3'
miRNA:   3'- gCCG-----CCGACGUGU---------UGGGCU---------------ACGG-GCU- -5'
12948 3' -60.3 NC_003387.1 + 51978 0.66 0.436939
Target:  5'- gCGGUGGCcgacCGCAuCCUGGcgcaccUGCCCGAc -3'
miRNA:   3'- -GCCGCCGac--GUGUuGGGCU------ACGGGCU- -5'
12948 3' -60.3 NC_003387.1 + 7892 0.66 0.436939
Target:  5'- aGGuCGGCcGCACucguGCCCGcgcgcacguGUGgCCGAa -3'
miRNA:   3'- gCC-GCCGaCGUGu---UGGGC---------UACgGGCU- -5'
12948 3' -60.3 NC_003387.1 + 25530 0.66 0.436939
Target:  5'- cCGGUGucacGUUcgGCAACCCGAUGCgCGAg -3'
miRNA:   3'- -GCCGC----CGAcgUGUUGGGCUACGgGCU- -5'
12948 3' -60.3 NC_003387.1 + 9611 0.66 0.436939
Target:  5'- gCGGCGccGCgccgucGCGCucguACCCGgcGCCCGu -3'
miRNA:   3'- -GCCGC--CGa-----CGUGu---UGGGCuaCGGGCu -5'
12948 3' -60.3 NC_003387.1 + 48206 0.66 0.436939
Target:  5'- cCGGCGGCg--GCGGCCgaGGUGaCCCGc -3'
miRNA:   3'- -GCCGCCGacgUGUUGGg-CUAC-GGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.