miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12948 5' -54.4 NC_003387.1 + 32194 0.66 0.774447
Target:  5'- aGCUGCGcgucgucaccgacgaGCGcgaCGCCGCgCUGcGCGAg -3'
miRNA:   3'- -CGACGC---------------CGCauaGCGGCG-GAUuUGCU- -5'
12948 5' -54.4 NC_003387.1 + 45858 0.66 0.770388
Target:  5'- gGCgacCGGCGUcuuGUUGgCGCcCUGAGCGGu -3'
miRNA:   3'- -CGac-GCCGCA---UAGCgGCG-GAUUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 627 0.66 0.770388
Target:  5'- gGCgaggGCaGCG--UCGCCGCCgcggcAGCGAc -3'
miRNA:   3'- -CGa---CGcCGCauAGCGGCGGau---UUGCU- -5'
12948 5' -54.4 NC_003387.1 + 1412 0.66 0.770388
Target:  5'- aGUUGU-GCGaggCGCCGCCgccGACGAg -3'
miRNA:   3'- -CGACGcCGCauaGCGGCGGau-UUGCU- -5'
12948 5' -54.4 NC_003387.1 + 17017 0.66 0.770388
Target:  5'- --aGCGGCaGgccGUCGUCGCCgu-ACGGc -3'
miRNA:   3'- cgaCGCCG-Ca--UAGCGGCGGauuUGCU- -5'
12948 5' -54.4 NC_003387.1 + 2335 0.66 0.770388
Target:  5'- aGCU-CGGCgGUGUCgagGCCGCCgucGGCGu -3'
miRNA:   3'- -CGAcGCCG-CAUAG---CGGCGGau-UUGCu -5'
12948 5' -54.4 NC_003387.1 + 25212 0.66 0.770388
Target:  5'- cGCgGCGGCGgccggAUCuucgcgccacaGCCGCUcgaAAGCGAa -3'
miRNA:   3'- -CGaCGCCGCa----UAG-----------CGGCGGa--UUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 15873 0.66 0.770388
Target:  5'- uGCUGCuugagGGCGgucacagCGCCGCCgc--CGGg -3'
miRNA:   3'- -CGACG-----CCGCaua----GCGGCGGauuuGCU- -5'
12948 5' -54.4 NC_003387.1 + 22362 0.66 0.76937
Target:  5'- aGCUGCaGGCGgucgacucgugaaUGUgGCCGCC-GGGCa- -3'
miRNA:   3'- -CGACG-CCGC-------------AUAgCGGCGGaUUUGcu -5'
12948 5' -54.4 NC_003387.1 + 51750 0.66 0.76014
Target:  5'- uGCUGCGGaaaGUcUCuGCgGCCgu-GCGGg -3'
miRNA:   3'- -CGACGCCg--CAuAG-CGgCGGauuUGCU- -5'
12948 5' -54.4 NC_003387.1 + 42242 0.66 0.759108
Target:  5'- uGCUGCcaaccuuGGCG-AUCGCCauGCCaccGGCGAc -3'
miRNA:   3'- -CGACG-------CCGCaUAGCGG--CGGau-UUGCU- -5'
12948 5' -54.4 NC_003387.1 + 44962 0.66 0.74976
Target:  5'- gGCcGCGGCucaggccgcgAUCGCCGCUgccgccgAGGCGGu -3'
miRNA:   3'- -CGaCGCCGca--------UAGCGGCGGa------UUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 17246 0.66 0.74976
Target:  5'- cGCcGUGGCGUGUCGaaaCGUCgauccaguucGACGAc -3'
miRNA:   3'- -CGaCGCCGCAUAGCg--GCGGau--------UUGCU- -5'
12948 5' -54.4 NC_003387.1 + 15265 0.66 0.74976
Target:  5'- --gGCGGCGcagCGCCGCC--AGCa- -3'
miRNA:   3'- cgaCGCCGCauaGCGGCGGauUUGcu -5'
12948 5' -54.4 NC_003387.1 + 44626 0.66 0.739258
Target:  5'- gGC-GCGaGCGUGUgGCCcuggccgcgGCCUcgGCGAu -3'
miRNA:   3'- -CGaCGC-CGCAUAgCGG---------CGGAuuUGCU- -5'
12948 5' -54.4 NC_003387.1 + 51790 0.66 0.739258
Target:  5'- gGCUG-GGCGUcgAUCGCC-CCgAGugGGa -3'
miRNA:   3'- -CGACgCCGCA--UAGCGGcGGaUUugCU- -5'
12948 5' -54.4 NC_003387.1 + 26812 0.67 0.717938
Target:  5'- cGCUGgugguCGGUGagcgCGCCGCcCUGGACGc -3'
miRNA:   3'- -CGAC-----GCCGCaua-GCGGCG-GAUUUGCu -5'
12948 5' -54.4 NC_003387.1 + 33806 0.67 0.717938
Target:  5'- aGCUGCGuaGggucgagcgCGCCGCC--GACGGc -3'
miRNA:   3'- -CGACGCcgCaua------GCGGCGGauUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 47927 0.67 0.717938
Target:  5'- cGUUGUGGCc-GUCGCCGCgggccuGCGAc -3'
miRNA:   3'- -CGACGCCGcaUAGCGGCGgauu--UGCU- -5'
12948 5' -54.4 NC_003387.1 + 39882 0.67 0.707143
Target:  5'- cGgUGCGGUGUccaCGCCGCCcuu-CGGc -3'
miRNA:   3'- -CgACGCCGCAua-GCGGCGGauuuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.