miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12948 5' -54.4 NC_003387.1 + 32337 0.97 0.009285
Target:  5'- cGCUGCGGCugAUCGCCGCCUAAACGAc -3'
miRNA:   3'- -CGACGCCGcaUAGCGGCGGAUUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 7754 0.78 0.1728
Target:  5'- gGCaGCGGCG-AUCGCgGCCUGAGCc- -3'
miRNA:   3'- -CGaCGCCGCaUAGCGgCGGAUUUGcu -5'
12948 5' -54.4 NC_003387.1 + 27503 0.75 0.292864
Target:  5'- gGCUGUGGCGcgaagAUCcgGCCGCCgccGCGAg -3'
miRNA:   3'- -CGACGCCGCa----UAG--CGGCGGauuUGCU- -5'
12948 5' -54.4 NC_003387.1 + 17147 0.74 0.332408
Target:  5'- gGCUGUcaccGGCGgcccgcgcugagcugGUgCGCCGCCUGGGCGGc -3'
miRNA:   3'- -CGACG----CCGCa--------------UA-GCGGCGGAUUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 28565 0.73 0.339781
Target:  5'- --gGCGGCG-AUCGCCGUC--GACGAc -3'
miRNA:   3'- cgaCGCCGCaUAGCGGCGGauUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 48957 0.73 0.356586
Target:  5'- gGCUGCucGGCGUaccacugcGUCGUCaGCUUGGACGAc -3'
miRNA:   3'- -CGACG--CCGCA--------UAGCGG-CGGAUUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 20516 0.73 0.365205
Target:  5'- aGC-GCGGCGUcgCGCuCGUCgguGACGAc -3'
miRNA:   3'- -CGaCGCCGCAuaGCG-GCGGau-UUGCU- -5'
12948 5' -54.4 NC_003387.1 + 45869 0.72 0.391912
Target:  5'- uGCUGCGGCugcgCGCCGCggccGAGCGGg -3'
miRNA:   3'- -CGACGCCGcauaGCGGCGga--UUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 50408 0.72 0.401093
Target:  5'- aGCUGUacgucgGGCGgcagAUCGUCGCCUcgGCGu -3'
miRNA:   3'- -CGACG------CCGCa---UAGCGGCGGAuuUGCu -5'
12948 5' -54.4 NC_003387.1 + 29005 0.72 0.41041
Target:  5'- cCUGCGcCGagucguUCGCCGCCUGGGCGu -3'
miRNA:   3'- cGACGCcGCau----AGCGGCGGAUUUGCu -5'
12948 5' -54.4 NC_003387.1 + 7174 0.72 0.42944
Target:  5'- aGCUgGCGGCGgAUCGCCuuGCCgc-ACGGc -3'
miRNA:   3'- -CGA-CGCCGCaUAGCGG--CGGauuUGCU- -5'
12948 5' -54.4 NC_003387.1 + 30572 0.71 0.439148
Target:  5'- cGCUGa-GCGUGcCGCCGCCagUGAACGu -3'
miRNA:   3'- -CGACgcCGCAUaGCGGCGG--AUUUGCu -5'
12948 5' -54.4 NC_003387.1 + 48476 0.71 0.439148
Target:  5'- cUUGCGGCGUAgugagGCCGUCgcGGCGGg -3'
miRNA:   3'- cGACGCCGCAUag---CGGCGGauUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 28805 0.71 0.458933
Target:  5'- --cGCGGCGUGggaagCGCaCGCCaccaAGACGAu -3'
miRNA:   3'- cgaCGCCGCAUa----GCG-GCGGa---UUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 13894 0.7 0.499859
Target:  5'- aGCUGCGGCGgcUCGUCgaGCCagcuAACa- -3'
miRNA:   3'- -CGACGCCGCauAGCGG--CGGau--UUGcu -5'
12948 5' -54.4 NC_003387.1 + 41339 0.7 0.510346
Target:  5'- aGC-GUGGCGccgAUCGCCGCaaacGACGAc -3'
miRNA:   3'- -CGaCGCCGCa--UAGCGGCGgau-UUGCU- -5'
12948 5' -54.4 NC_003387.1 + 44263 0.7 0.510346
Target:  5'- cGCUGCGGaauugggCGCCGCCgcaggucAGCGGg -3'
miRNA:   3'- -CGACGCCgcaua--GCGGCGGau-----UUGCU- -5'
12948 5' -54.4 NC_003387.1 + 433 0.7 0.510346
Target:  5'- gGCUuaugGCGGUuaaGUcuGUCGCCGCCgcGGCGGc -3'
miRNA:   3'- -CGA----CGCCG---CA--UAGCGGCGGauUUGCU- -5'
12948 5' -54.4 NC_003387.1 + 37461 0.7 0.510346
Target:  5'- uGCUgGCGGCGcugCGCCGCCaAAAgGu -3'
miRNA:   3'- -CGA-CGCCGCauaGCGGCGGaUUUgCu -5'
12948 5' -54.4 NC_003387.1 + 22699 0.7 0.510346
Target:  5'- --gGCGGCGc-UgGCgGCCUGGGCGAu -3'
miRNA:   3'- cgaCGCCGCauAgCGgCGGAUUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.