miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12949 5' -59.4 NC_003387.1 + 47272 0.66 0.52665
Target:  5'- gUCaCCGCuuugGC-CGcCGUCGGCGCCCu -3'
miRNA:   3'- gAGcGGCG----CGuGCaGCAGCUGUGGGu -5'
12949 5' -59.4 NC_003387.1 + 47915 0.66 0.52665
Target:  5'- -gCGCaCGCGCugGUCGgCGGCAggCAu -3'
miRNA:   3'- gaGCG-GCGCGugCAGCaGCUGUggGU- -5'
12949 5' -59.4 NC_003387.1 + 37964 0.66 0.52665
Target:  5'- --gGUCGaGCACGacaacgaccagaUCGUCGACGCCUg -3'
miRNA:   3'- gagCGGCgCGUGC------------AGCAGCUGUGGGu -5'
12949 5' -59.4 NC_003387.1 + 41018 0.66 0.52665
Target:  5'- --gGCCGgGUcgacuGCGUCGacggcgacaUUGACACCCAc -3'
miRNA:   3'- gagCGGCgCG-----UGCAGC---------AGCUGUGGGU- -5'
12949 5' -59.4 NC_003387.1 + 21522 0.66 0.52665
Target:  5'- -aCGCgauucagGCGCGCGUCGcguUCGACgugccGCCCGg -3'
miRNA:   3'- gaGCGg------CGCGUGCAGC---AGCUG-----UGGGU- -5'
12949 5' -59.4 NC_003387.1 + 144 0.66 0.520519
Target:  5'- gCUCGCCGgGCgguuugcuaccacucGCGcUCGgucacgaaagUGACGCCCGg -3'
miRNA:   3'- -GAGCGGCgCG---------------UGC-AGCa---------GCUGUGGGU- -5'
12949 5' -59.4 NC_003387.1 + 21285 0.66 0.516448
Target:  5'- -gCGCacCGCGU-CGUCGUCGAgGCCg- -3'
miRNA:   3'- gaGCG--GCGCGuGCAGCAGCUgUGGgu -5'
12949 5' -59.4 NC_003387.1 + 24645 0.66 0.516448
Target:  5'- cCUCGCCcuGCuGCGCGagGUCGccaGCGCCgAg -3'
miRNA:   3'- -GAGCGG--CG-CGUGCagCAGC---UGUGGgU- -5'
12949 5' -59.4 NC_003387.1 + 5129 0.66 0.516448
Target:  5'- aUCGCCGCaCGCGacgaggggCGcUCGGCGCCg- -3'
miRNA:   3'- gAGCGGCGcGUGCa-------GC-AGCUGUGGgu -5'
12949 5' -59.4 NC_003387.1 + 19534 0.66 0.516448
Target:  5'- aCUCGCUGCuGCcgaucGCGcUCGUCGAgaACCUg -3'
miRNA:   3'- -GAGCGGCG-CG-----UGC-AGCAGCUg-UGGGu -5'
12949 5' -59.4 NC_003387.1 + 22173 0.66 0.516448
Target:  5'- --gGCCGCGgcggcggucCAUGUCGg-GGCGCCCGu -3'
miRNA:   3'- gagCGGCGC---------GUGCAGCagCUGUGGGU- -5'
12949 5' -59.4 NC_003387.1 + 17067 0.66 0.516448
Target:  5'- -cCGcCCGCGguCGagGUCGGCcaguGCCCGc -3'
miRNA:   3'- gaGC-GGCGCguGCagCAGCUG----UGGGU- -5'
12949 5' -59.4 NC_003387.1 + 5994 0.66 0.516448
Target:  5'- -cCGCCGUGCA--UCGUCcacuCGCCCGc -3'
miRNA:   3'- gaGCGGCGCGUgcAGCAGcu--GUGGGU- -5'
12949 5' -59.4 NC_003387.1 + 33738 0.66 0.516448
Target:  5'- -aCGCCGC-CAgcUCGUCGAUGCUCGc -3'
miRNA:   3'- gaGCGGCGcGUgcAGCAGCUGUGGGU- -5'
12949 5' -59.4 NC_003387.1 + 2291 0.66 0.516448
Target:  5'- cCUCGCUgGCGUACGcCGaggCGACgaucugccGCCCGa -3'
miRNA:   3'- -GAGCGG-CGCGUGCaGCa--GCUG--------UGGGU- -5'
12949 5' -59.4 NC_003387.1 + 11702 0.66 0.506326
Target:  5'- gUCGCCGuCGaCGCaGUCGacccggccgUCGACGCCg- -3'
miRNA:   3'- gAGCGGC-GC-GUG-CAGC---------AGCUGUGGgu -5'
12949 5' -59.4 NC_003387.1 + 48861 0.66 0.506326
Target:  5'- -aCGCCcugguGCGCAgcCGgaUCGUCGGCGCCg- -3'
miRNA:   3'- gaGCGG-----CGCGU--GC--AGCAGCUGUGGgu -5'
12949 5' -59.4 NC_003387.1 + 29344 0.66 0.506326
Target:  5'- -cCGCCGCGCGCuucaUCcUCGGCgACCUg -3'
miRNA:   3'- gaGCGGCGCGUGc---AGcAGCUG-UGGGu -5'
12949 5' -59.4 NC_003387.1 + 6640 0.66 0.506326
Target:  5'- --gGCCGUcuuggGCuCGUCGUCGACccGCUCAa -3'
miRNA:   3'- gagCGGCG-----CGuGCAGCAGCUG--UGGGU- -5'
12949 5' -59.4 NC_003387.1 + 23835 0.66 0.506326
Target:  5'- -gCGCCGCGC-CGggacUCGGCGCCg- -3'
miRNA:   3'- gaGCGGCGCGuGCagc-AGCUGUGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.