miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12950 3' -62.8 NC_003387.1 + 123 0.66 0.334484
Target:  5'- cAGGGCGuguuuGCUGAGcucgcUCGCCG-GGCGGUu -3'
miRNA:   3'- -UUCCGC-----CGGCUUc----AGCGGCuCCGCCA- -5'
12950 3' -62.8 NC_003387.1 + 2395 0.66 0.334484
Target:  5'- cGGGCGGCCuGAAuGaaGUCGGGGCGc- -3'
miRNA:   3'- uUCCGCCGG-CUU-CagCGGCUCCGCca -5'
12950 3' -62.8 NC_003387.1 + 47174 0.66 0.334484
Target:  5'- -cGGUGGCCcugguGGUCGCCcucGGGGCucaGGUg -3'
miRNA:   3'- uuCCGCCGGcu---UCAGCGG---CUCCG---CCA- -5'
12950 3' -62.8 NC_003387.1 + 3299 0.66 0.326739
Target:  5'- -cGGCcGCCGAcucGGgCGCCGAGGUGc- -3'
miRNA:   3'- uuCCGcCGGCU---UCaGCGGCUCCGCca -5'
12950 3' -62.8 NC_003387.1 + 50418 0.66 0.326739
Target:  5'- cGGGCGGCaGAucGUCGCCucGGCGu- -3'
miRNA:   3'- uUCCGCCGgCUu-CAGCGGcuCCGCca -5'
12950 3' -62.8 NC_003387.1 + 16056 0.66 0.326739
Target:  5'- --cGCGGCC-AGGUCGgCGAGcCGGUg -3'
miRNA:   3'- uucCGCCGGcUUCAGCgGCUCcGCCA- -5'
12950 3' -62.8 NC_003387.1 + 2339 0.66 0.319128
Target:  5'- -cGGCGGUguCGAGGcCGCCGucGGCGu- -3'
miRNA:   3'- uuCCGCCG--GCUUCaGCGGCu-CCGCca -5'
12950 3' -62.8 NC_003387.1 + 9746 0.66 0.319128
Target:  5'- cAAGGuCGGCC-AGGcUCacgcgcauGCCGGGGCGGc -3'
miRNA:   3'- -UUCC-GCCGGcUUC-AG--------CGGCUCCGCCa -5'
12950 3' -62.8 NC_003387.1 + 2527 0.66 0.319128
Target:  5'- uGAGG-GGCCGGuguuccgcacgcGGUCGCCGcGGCa-- -3'
miRNA:   3'- -UUCCgCCGGCU------------UCAGCGGCuCCGcca -5'
12950 3' -62.8 NC_003387.1 + 29695 0.66 0.319128
Target:  5'- --cGUGGCCGAGGUCGaggCGcucGGCGGc -3'
miRNA:   3'- uucCGCCGGCUUCAGCg--GCu--CCGCCa -5'
12950 3' -62.8 NC_003387.1 + 30427 0.66 0.31165
Target:  5'- cGGGUGaaaCCGAG---GCCGAGGCGGUg -3'
miRNA:   3'- uUCCGCc--GGCUUcagCGGCUCCGCCA- -5'
12950 3' -62.8 NC_003387.1 + 42846 0.66 0.307228
Target:  5'- -uGGCGGCgauCGAGGUCGUgcagucgaucaagguCGAGGaCGGc -3'
miRNA:   3'- uuCCGCCG---GCUUCAGCG---------------GCUCC-GCCa -5'
12950 3' -62.8 NC_003387.1 + 38517 0.66 0.304307
Target:  5'- gAGGGCGGCaaguGAG-CGCCGAcGGCGu- -3'
miRNA:   3'- -UUCCGCCGgc--UUCaGCGGCU-CCGCca -5'
12950 3' -62.8 NC_003387.1 + 23358 0.66 0.304307
Target:  5'- -cGGCGccGCUGAcggucaGGUCGCCGAGGauGa -3'
miRNA:   3'- uuCCGC--CGGCU------UCAGCGGCUCCgcCa -5'
12950 3' -62.8 NC_003387.1 + 10777 0.66 0.304307
Target:  5'- -uGGCGGCCugcaucgucGGGUCGUCGGcgucGGCGGc -3'
miRNA:   3'- uuCCGCCGGc--------UUCAGCGGCU----CCGCCa -5'
12950 3' -62.8 NC_003387.1 + 34453 0.66 0.304307
Target:  5'- cGGGCcuGCCGAAGuggaUCGUCGAcauGGCGGc -3'
miRNA:   3'- uUCCGc-CGGCUUC----AGCGGCU---CCGCCa -5'
12950 3' -62.8 NC_003387.1 + 21666 0.66 0.299965
Target:  5'- -cGGCGGCCGAGcacguguUCGCCGAcgcccuggccgccucGGCGa- -3'
miRNA:   3'- uuCCGCCGGCUUc------AGCGGCU---------------CCGCca -5'
12950 3' -62.8 NC_003387.1 + 46322 0.67 0.29002
Target:  5'- --cGCGGCCGGAaucagCGCCGgggaaacccacgAGGCGGg -3'
miRNA:   3'- uucCGCCGGCUUca---GCGGC------------UCCGCCa -5'
12950 3' -62.8 NC_003387.1 + 25804 0.67 0.285838
Target:  5'- -cGGCGGCCucGGUgGCgGccugcucggcggccuGGGCGGUg -3'
miRNA:   3'- uuCCGCCGGcuUCAgCGgC---------------UCCGCCA- -5'
12950 3' -62.8 NC_003387.1 + 17019 0.67 0.283076
Target:  5'- -cGGCaGGCCGucGUCGCCGuacGGCc-- -3'
miRNA:   3'- uuCCG-CCGGCuuCAGCGGCu--CCGcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.