Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12951 | 3' | -58.6 | NC_003387.1 | + | 42046 | 0.66 | 0.568477 |
Target: 5'- ----aCCGCCGAGGcggccGUGGuCGCaGCCg -3' miRNA: 3'- ucuagGGCGGCUCCa----CACC-GUGcUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 50646 | 0.66 | 0.568477 |
Target: 5'- --uUCaCCGCCGAGGaccgcGUcGCGCaGACCa -3' miRNA: 3'- ucuAG-GGCGGCUCCa----CAcCGUG-CUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 51775 | 0.66 | 0.557933 |
Target: 5'- ---aCCCGcCCGAcuGGUGgcugGGCGuCGAUCg -3' miRNA: 3'- ucuaGGGC-GGCU--CCACa---CCGU-GCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 51194 | 0.66 | 0.548491 |
Target: 5'- cGAUCCuCGgcaCCGAGGUGcugagccugcacgucGGCcGCGGCCu -3' miRNA: 3'- uCUAGG-GC---GGCUCCACa--------------CCG-UGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 32615 | 0.66 | 0.547445 |
Target: 5'- cGggCUCGCCGcGGg--GGCGCuGACCc -3' miRNA: 3'- uCuaGGGCGGCuCCacaCCGUG-CUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 17572 | 0.66 | 0.53702 |
Target: 5'- ---gCCCGCCcucgcuGGUGUcGUGCGGCCa -3' miRNA: 3'- ucuaGGGCGGcu----CCACAcCGUGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 44609 | 0.66 | 0.53702 |
Target: 5'- cGAcgCCGUCGGGccGUGGCGCGAgCg -3' miRNA: 3'- uCUagGGCGGCUCcaCACCGUGCUgG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 33473 | 0.66 | 0.526664 |
Target: 5'- cGAagUCGCCGAGGcgGUcGGCgcccGCGAUCg -3' miRNA: 3'- uCUagGGCGGCUCCa-CA-CCG----UGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 1267 | 0.66 | 0.526664 |
Target: 5'- cGGAcCCCGgCGAGGUGUucacGGUgauGCG-CCu -3' miRNA: 3'- -UCUaGGGCgGCUCCACA----CCG---UGCuGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 14717 | 0.66 | 0.526664 |
Target: 5'- cGGGUCUgG-CGAGGUGUGGauucaggACGGCa -3' miRNA: 3'- -UCUAGGgCgGCUCCACACCg------UGCUGg -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 45853 | 0.66 | 0.516385 |
Target: 5'- gAGAUCCUGCgCGAGcugcUGcGGCugcgcgccGCGGCCg -3' miRNA: 3'- -UCUAGGGCG-GCUCc---ACaCCG--------UGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 34035 | 0.66 | 0.515361 |
Target: 5'- cGA-CCCGCaccugguCGGcGUGUGGgGCGGCCu -3' miRNA: 3'- uCUaGGGCG-------GCUcCACACCgUGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 37911 | 0.67 | 0.506187 |
Target: 5'- cGA-CCCGCUGcccGGUGgcucGGCACcGCCg -3' miRNA: 3'- uCUaGGGCGGCu--CCACa---CCGUGcUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 26121 | 0.67 | 0.506187 |
Target: 5'- --uUCgCCGCCGAGGcguUGUcaGCACGAgCCa -3' miRNA: 3'- ucuAG-GGCGGCUCC---ACAc-CGUGCU-GG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 31031 | 0.67 | 0.486057 |
Target: 5'- cGcgCUCGCCGAGGcGgccagGGCGuCGGCg -3' miRNA: 3'- uCuaGGGCGGCUCCaCa----CCGU-GCUGg -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 20392 | 0.67 | 0.476135 |
Target: 5'- cGGUaaCCCGuaCCGuuuucAGGUGcucucgGGCACGACCg -3' miRNA: 3'- uCUA--GGGC--GGC-----UCCACa-----CCGUGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 44979 | 0.67 | 0.475149 |
Target: 5'- cGAUCgccgcugCCGCCGAGGcggugcUGUgaGGCACuACCg -3' miRNA: 3'- uCUAG-------GGCGGCUCC------ACA--CCGUGcUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 39149 | 0.67 | 0.466315 |
Target: 5'- cAGGuUCCgCGCCGAGGgcGUGuacuggucgguGCGCGACa -3' miRNA: 3'- -UCU-AGG-GCGGCUCCa-CAC-----------CGUGCUGg -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 1948 | 0.67 | 0.466315 |
Target: 5'- uGAUCCgGCCGcGGGUcUGGC-CGGgCa -3' miRNA: 3'- uCUAGGgCGGC-UCCAcACCGuGCUgG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 51897 | 0.67 | 0.466315 |
Target: 5'- gAGAagCUCGUCGAGGUGcugcccgagcUGGC-CGACa -3' miRNA: 3'- -UCUa-GGGCGGCUCCAC----------ACCGuGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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