miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12951 3' -58.6 NC_003387.1 + 11979 0.69 0.39186
Target:  5'- cGAUCUUccauuucaUCGAGGacgUGUGGCGCGGCCu -3'
miRNA:   3'- uCUAGGGc-------GGCUCC---ACACCGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 34952 0.68 0.399846
Target:  5'- gGGAUCguuuCgGCCGAcgccgugaugagcGGUGUGGCcccugGCGGCCc -3'
miRNA:   3'- -UCUAG----GgCGGCU-------------CCACACCG-----UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 46771 0.68 0.40074
Target:  5'- --cUCCCGCCGAGGUcgGUccucGCGCGgaaACCu -3'
miRNA:   3'- ucuAGGGCGGCUCCA--CAc---CGUGC---UGG- -5'
12951 3' -58.6 NC_003387.1 + 30225 0.68 0.40074
Target:  5'- gAGcgCgCCGCCGAGGccGUcgcccGGUACGACg -3'
miRNA:   3'- -UCuaG-GGCGGCUCCa-CA-----CCGUGCUGg -5'
12951 3' -58.6 NC_003387.1 + 22571 0.68 0.409747
Target:  5'- cGggCCUgGUCGAGG-GUGGCcucgguGCGGCCa -3'
miRNA:   3'- uCuaGGG-CGGCUCCaCACCG------UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 2416 0.68 0.437507
Target:  5'- cGAcCCCGCCuGGGagaUGUGGCAgCGcaACCg -3'
miRNA:   3'- uCUaGGGCGGcUCC---ACACCGU-GC--UGG- -5'
12951 3' -58.6 NC_003387.1 + 39149 0.67 0.466315
Target:  5'- cAGGuUCCgCGCCGAGGgcGUGuacuggucgguGCGCGACa -3'
miRNA:   3'- -UCU-AGG-GCGGCUCCa-CAC-----------CGUGCUGg -5'
12951 3' -58.6 NC_003387.1 + 51897 0.67 0.466315
Target:  5'- gAGAagCUCGUCGAGGUGcugcccgagcUGGC-CGACa -3'
miRNA:   3'- -UCUa-GGGCGGCUCCAC----------ACCGuGCUGg -5'
12951 3' -58.6 NC_003387.1 + 1948 0.67 0.466315
Target:  5'- uGAUCCgGCCGcGGGUcUGGC-CGGgCa -3'
miRNA:   3'- uCUAGGgCGGC-UCCAcACCGuGCUgG- -5'
12951 3' -58.6 NC_003387.1 + 44979 0.67 0.475149
Target:  5'- cGAUCgccgcugCCGCCGAGGcggugcUGUgaGGCACuACCg -3'
miRNA:   3'- uCUAG-------GGCGGCUCC------ACA--CCGUGcUGG- -5'
12951 3' -58.6 NC_003387.1 + 20392 0.67 0.476135
Target:  5'- cGGUaaCCCGuaCCGuuuucAGGUGcucucgGGCACGACCg -3'
miRNA:   3'- uCUA--GGGC--GGC-----UCCACa-----CCGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 31031 0.67 0.486057
Target:  5'- cGcgCUCGCCGAGGcGgccagGGCGuCGGCg -3'
miRNA:   3'- uCuaGGGCGGCUCCaCa----CCGU-GCUGg -5'
12951 3' -58.6 NC_003387.1 + 37911 0.67 0.506187
Target:  5'- cGA-CCCGCUGcccGGUGgcucGGCACcGCCg -3'
miRNA:   3'- uCUaGGGCGGCu--CCACa---CCGUGcUGG- -5'
12951 3' -58.6 NC_003387.1 + 26121 0.67 0.506187
Target:  5'- --uUCgCCGCCGAGGcguUGUcaGCACGAgCCa -3'
miRNA:   3'- ucuAG-GGCGGCUCC---ACAc-CGUGCU-GG- -5'
12951 3' -58.6 NC_003387.1 + 34035 0.66 0.515361
Target:  5'- cGA-CCCGCaccugguCGGcGUGUGGgGCGGCCu -3'
miRNA:   3'- uCUaGGGCG-------GCUcCACACCgUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 45853 0.66 0.516385
Target:  5'- gAGAUCCUGCgCGAGcugcUGcGGCugcgcgccGCGGCCg -3'
miRNA:   3'- -UCUAGGGCG-GCUCc---ACaCCG--------UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 14717 0.66 0.526664
Target:  5'- cGGGUCUgG-CGAGGUGUGGauucaggACGGCa -3'
miRNA:   3'- -UCUAGGgCgGCUCCACACCg------UGCUGg -5'
12951 3' -58.6 NC_003387.1 + 1267 0.66 0.526664
Target:  5'- cGGAcCCCGgCGAGGUGUucacGGUgauGCG-CCu -3'
miRNA:   3'- -UCUaGGGCgGCUCCACA----CCG---UGCuGG- -5'
12951 3' -58.6 NC_003387.1 + 33473 0.66 0.526664
Target:  5'- cGAagUCGCCGAGGcgGUcGGCgcccGCGAUCg -3'
miRNA:   3'- uCUagGGCGGCUCCa-CA-CCG----UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 17572 0.66 0.53702
Target:  5'- ---gCCCGCCcucgcuGGUGUcGUGCGGCCa -3'
miRNA:   3'- ucuaGGGCGGcu----CCACAcCGUGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.