miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12951 3' -58.6 NC_003387.1 + 2416 0.68 0.437507
Target:  5'- cGAcCCCGCCuGGGagaUGUGGCAgCGcaACCg -3'
miRNA:   3'- uCUaGGGCGGcUCC---ACACCGU-GC--UGG- -5'
12951 3' -58.6 NC_003387.1 + 22571 0.68 0.409747
Target:  5'- cGggCCUgGUCGAGG-GUGGCcucgguGCGGCCa -3'
miRNA:   3'- uCuaGGG-CGGCUCCaCACCG------UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 46771 0.68 0.40074
Target:  5'- --cUCCCGCCGAGGUcgGUccucGCGCGgaaACCu -3'
miRNA:   3'- ucuAGGGCGGCUCCA--CAc---CGUGC---UGG- -5'
12951 3' -58.6 NC_003387.1 + 30225 0.68 0.40074
Target:  5'- gAGcgCgCCGCCGAGGccGUcgcccGGUACGACg -3'
miRNA:   3'- -UCuaG-GGCGGCUCCa-CA-----CCGUGCUGg -5'
12951 3' -58.6 NC_003387.1 + 34952 0.68 0.399846
Target:  5'- gGGAUCguuuCgGCCGAcgccgugaugagcGGUGUGGCcccugGCGGCCc -3'
miRNA:   3'- -UCUAG----GgCGGCU-------------CCACACCG-----UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 11979 0.69 0.39186
Target:  5'- cGAUCUUccauuucaUCGAGGacgUGUGGCGCGGCCu -3'
miRNA:   3'- uCUAGGGc-------GGCUCC---ACACCGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 31011 0.69 0.39186
Target:  5'- aGGAUCggGCCGAGcGUGcgccggGGCGgCGGCCa -3'
miRNA:   3'- -UCUAGggCGGCUC-CACa-----CCGU-GCUGG- -5'
12951 3' -58.6 NC_003387.1 + 48820 0.69 0.37449
Target:  5'- -cGUCCCGCCGGucGUGcugcucGGCGCGACg -3'
miRNA:   3'- ucUAGGGCGGCUc-CACa-----CCGUGCUGg -5'
12951 3' -58.6 NC_003387.1 + 51030 0.69 0.37449
Target:  5'- cGAUCcagucgaccgCCGCCGcGGUGUcGGUACcGGCCc -3'
miRNA:   3'- uCUAG----------GGCGGCuCCACA-CCGUG-CUGG- -5'
12951 3' -58.6 NC_003387.1 + 4061 0.69 0.37449
Target:  5'- cGAUUCCGaggUGGuGGUGUGGUugGACa -3'
miRNA:   3'- uCUAGGGCg--GCU-CCACACCGugCUGg -5'
12951 3' -58.6 NC_003387.1 + 36005 0.69 0.37449
Target:  5'- cGAUCgaCGgCGAGGUcGUGGUGCG-CCg -3'
miRNA:   3'- uCUAGg-GCgGCUCCA-CACCGUGCuGG- -5'
12951 3' -58.6 NC_003387.1 + 48194 0.69 0.360974
Target:  5'- aAGGUgCCCgcaccggcggcggcgGCCGAGGUGacccGCACGAUCg -3'
miRNA:   3'- -UCUA-GGG---------------CGGCUCCACac--CGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 51465 0.7 0.341346
Target:  5'- ---cCUCGCCGGGGUccgucggcuucgGUGGCGuacCGGCCa -3'
miRNA:   3'- ucuaGGGCGGCUCCA------------CACCGU---GCUGG- -5'
12951 3' -58.6 NC_003387.1 + 6827 0.7 0.340545
Target:  5'- cGGUUCgccuacgUGCUG-GGUGUGaGCGCGACCg -3'
miRNA:   3'- uCUAGG-------GCGGCuCCACAC-CGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 14978 0.7 0.302974
Target:  5'- aAGAUCCCGCCGcGcacgGUGGCGC-ACa -3'
miRNA:   3'- -UCUAGGGCGGCuCca--CACCGUGcUGg -5'
12951 3' -58.6 NC_003387.1 + 15272 0.71 0.295709
Target:  5'- cGGUCgaCGCCGAGGagaUGUuGCACGACa -3'
miRNA:   3'- uCUAGg-GCGGCUCC---ACAcCGUGCUGg -5'
12951 3' -58.6 NC_003387.1 + 12439 0.71 0.295709
Target:  5'- uAGggCgCUGCCGAGGUucgcUGGCGgCGGCCu -3'
miRNA:   3'- -UCuaG-GGCGGCUCCAc---ACCGU-GCUGG- -5'
12951 3' -58.6 NC_003387.1 + 49294 0.71 0.287172
Target:  5'- cAGGUgCUCGCCGAGcacgccgagGGCACGGCCc -3'
miRNA:   3'- -UCUA-GGGCGGCUCcaca-----CCGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 39617 0.72 0.254962
Target:  5'- uGGA--UCGCCGAGGUGgcGGCAUGAgCCu -3'
miRNA:   3'- -UCUagGGCGGCUCCACa-CCGUGCU-GG- -5'
12951 3' -58.6 NC_003387.1 + 27145 0.72 0.242441
Target:  5'- ---gCCCGCCGGGGUc-GGCGCcGCCg -3'
miRNA:   3'- ucuaGGGCGGCUCCAcaCCGUGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.