miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12951 3' -58.6 NC_003387.1 + 51897 0.67 0.466315
Target:  5'- gAGAagCUCGUCGAGGUGcugcccgagcUGGC-CGACa -3'
miRNA:   3'- -UCUa-GGGCGGCUCCAC----------ACCGuGCUGg -5'
12951 3' -58.6 NC_003387.1 + 51775 0.66 0.557933
Target:  5'- ---aCCCGcCCGAcuGGUGgcugGGCGuCGAUCg -3'
miRNA:   3'- ucuaGGGC-GGCU--CCACa---CCGU-GCUGG- -5'
12951 3' -58.6 NC_003387.1 + 51465 0.7 0.341346
Target:  5'- ---cCUCGCCGGGGUccgucggcuucgGUGGCGuacCGGCCa -3'
miRNA:   3'- ucuaGGGCGGCUCCA------------CACCGU---GCUGG- -5'
12951 3' -58.6 NC_003387.1 + 51194 0.66 0.548491
Target:  5'- cGAUCCuCGgcaCCGAGGUGcugagccugcacgucGGCcGCGGCCu -3'
miRNA:   3'- uCUAGG-GC---GGCUCCACa--------------CCG-UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 51030 0.69 0.37449
Target:  5'- cGAUCcagucgaccgCCGCCGcGGUGUcGGUACcGGCCc -3'
miRNA:   3'- uCUAG----------GGCGGCuCCACA-CCGUG-CUGG- -5'
12951 3' -58.6 NC_003387.1 + 50646 0.66 0.568477
Target:  5'- --uUCaCCGCCGAGGaccgcGUcGCGCaGACCa -3'
miRNA:   3'- ucuAG-GGCGGCUCCa----CAcCGUG-CUGG- -5'
12951 3' -58.6 NC_003387.1 + 49345 0.74 0.187351
Target:  5'- gGGAUgCCCGCCGAGGccagcuUGGUgaugccgucgACGACCg -3'
miRNA:   3'- -UCUA-GGGCGGCUCCac----ACCG----------UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 49294 0.71 0.287172
Target:  5'- cAGGUgCUCGCCGAGcacgccgagGGCACGGCCc -3'
miRNA:   3'- -UCUA-GGGCGGCUCcaca-----CCGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 48820 0.69 0.37449
Target:  5'- -cGUCCCGCCGGucGUGcugcucGGCGCGACg -3'
miRNA:   3'- ucUAGGGCGGCUc-CACa-----CCGUGCUGg -5'
12951 3' -58.6 NC_003387.1 + 48194 0.69 0.360974
Target:  5'- aAGGUgCCCgcaccggcggcggcgGCCGAGGUGacccGCACGAUCg -3'
miRNA:   3'- -UCUA-GGG---------------CGGCUCCACac--CGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 46771 0.68 0.40074
Target:  5'- --cUCCCGCCGAGGUcgGUccucGCGCGgaaACCu -3'
miRNA:   3'- ucuAGGGCGGCUCCA--CAc---CGUGC---UGG- -5'
12951 3' -58.6 NC_003387.1 + 45853 0.66 0.516385
Target:  5'- gAGAUCCUGCgCGAGcugcUGcGGCugcgcgccGCGGCCg -3'
miRNA:   3'- -UCUAGGGCG-GCUCc---ACaCCG--------UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 44979 0.67 0.475149
Target:  5'- cGAUCgccgcugCCGCCGAGGcggugcUGUgaGGCACuACCg -3'
miRNA:   3'- uCUAG-------GGCGGCUCC------ACA--CCGUGcUGG- -5'
12951 3' -58.6 NC_003387.1 + 44609 0.66 0.53702
Target:  5'- cGAcgCCGUCGGGccGUGGCGCGAgCg -3'
miRNA:   3'- uCUagGGCGGCUCcaCACCGUGCUgG- -5'
12951 3' -58.6 NC_003387.1 + 42046 0.66 0.568477
Target:  5'- ----aCCGCCGAGGcggccGUGGuCGCaGCCg -3'
miRNA:   3'- ucuagGGCGGCUCCa----CACC-GUGcUGG- -5'
12951 3' -58.6 NC_003387.1 + 41751 0.76 0.128856
Target:  5'- cGG-CUgGCCGcGGUGUGGUGCGACCu -3'
miRNA:   3'- uCUaGGgCGGCuCCACACCGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 39617 0.72 0.254962
Target:  5'- uGGA--UCGCCGAGGUGgcGGCAUGAgCCu -3'
miRNA:   3'- -UCUagGGCGGCUCCACa-CCGUGCU-GG- -5'
12951 3' -58.6 NC_003387.1 + 39233 0.73 0.215585
Target:  5'- cGAaCCCGCCGGGGcugucgGUGGUgcccuccucgccgucGCGGCCc -3'
miRNA:   3'- uCUaGGGCGGCUCCa-----CACCG---------------UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 39149 0.67 0.466315
Target:  5'- cAGGuUCCgCGCCGAGGgcGUGuacuggucgguGCGCGACa -3'
miRNA:   3'- -UCU-AGG-GCGGCUCCa-CAC-----------CGUGCUGg -5'
12951 3' -58.6 NC_003387.1 + 37911 0.67 0.506187
Target:  5'- cGA-CCCGCUGcccGGUGgcucGGCACcGCCg -3'
miRNA:   3'- uCUaGGGCGGCu--CCACa---CCGUGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.