Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12951 | 3' | -58.6 | NC_003387.1 | + | 15272 | 0.71 | 0.295709 |
Target: 5'- cGGUCgaCGCCGAGGagaUGUuGCACGACa -3' miRNA: 3'- uCUAGg-GCGGCUCC---ACAcCGUGCUGg -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 39149 | 0.67 | 0.466315 |
Target: 5'- cAGGuUCCgCGCCGAGGgcGUGuacuggucgguGCGCGACa -3' miRNA: 3'- -UCU-AGG-GCGGCUCCa-CAC-----------CGUGCUGg -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 50646 | 0.66 | 0.568477 |
Target: 5'- --uUCaCCGCCGAGGaccgcGUcGCGCaGACCa -3' miRNA: 3'- ucuAG-GGCGGCUCCa----CAcCGUG-CUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 33601 | 1.11 | 0.000361 |
Target: 5'- aAGAUCCCGCCGAGGUGUGGCACGACCu -3' miRNA: 3'- -UCUAGGGCGGCUCCACACCGUGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 35627 | 0.77 | 0.109361 |
Target: 5'- aGGAgCCCGCCGAGGcggccgGgcgGGCACuGGCCg -3' miRNA: 3'- -UCUaGGGCGGCUCCa-----Ca--CCGUG-CUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 41751 | 0.76 | 0.128856 |
Target: 5'- cGG-CUgGCCGcGGUGUGGUGCGACCu -3' miRNA: 3'- uCUaGGgCGGCuCCACACCGUGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 1519 | 0.75 | 0.151521 |
Target: 5'- cGGUCgugaaGUCGGGGcgGUGGCACGACCu -3' miRNA: 3'- uCUAGgg---CGGCUCCa-CACCGUGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 39617 | 0.72 | 0.254962 |
Target: 5'- uGGA--UCGCCGAGGUGgcGGCAUGAgCCu -3' miRNA: 3'- -UCUagGGCGGCUCCACa-CCGUGCU-GG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 49294 | 0.71 | 0.287172 |
Target: 5'- cAGGUgCUCGCCGAGcacgccgagGGCACGGCCc -3' miRNA: 3'- -UCUA-GGGCGGCUCcaca-----CCGUGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 51897 | 0.67 | 0.466315 |
Target: 5'- gAGAagCUCGUCGAGGUGcugcccgagcUGGC-CGACa -3' miRNA: 3'- -UCUa-GGGCGGCUCCAC----------ACCGuGCUGg -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 11979 | 0.69 | 0.39186 |
Target: 5'- cGAUCUUccauuucaUCGAGGacgUGUGGCGCGGCCu -3' miRNA: 3'- uCUAGGGc-------GGCUCC---ACACCGUGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 31011 | 0.69 | 0.39186 |
Target: 5'- aGGAUCggGCCGAGcGUGcgccggGGCGgCGGCCa -3' miRNA: 3'- -UCUAGggCGGCUC-CACa-----CCGU-GCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 14978 | 0.7 | 0.302974 |
Target: 5'- aAGAUCCCGCCGcGcacgGUGGCGC-ACa -3' miRNA: 3'- -UCUAGGGCGGCuCca--CACCGUGcUGg -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 30225 | 0.68 | 0.40074 |
Target: 5'- gAGcgCgCCGCCGAGGccGUcgcccGGUACGACg -3' miRNA: 3'- -UCuaG-GGCGGCUCCa-CA-----CCGUGCUGg -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 6827 | 0.7 | 0.340545 |
Target: 5'- cGGUUCgccuacgUGCUG-GGUGUGaGCGCGACCg -3' miRNA: 3'- uCUAGG-------GCGGCuCCACAC-CGUGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 48820 | 0.69 | 0.37449 |
Target: 5'- -cGUCCCGCCGGucGUGcugcucGGCGCGACg -3' miRNA: 3'- ucUAGGGCGGCUc-CACa-----CCGUGCUGg -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 2416 | 0.68 | 0.437507 |
Target: 5'- cGAcCCCGCCuGGGagaUGUGGCAgCGcaACCg -3' miRNA: 3'- uCUaGGGCGGcUCC---ACACCGU-GC--UGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 44979 | 0.67 | 0.475149 |
Target: 5'- cGAUCgccgcugCCGCCGAGGcggugcUGUgaGGCACuACCg -3' miRNA: 3'- uCUAG-------GGCGGCUCC------ACA--CCGUGcUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 48194 | 0.69 | 0.360974 |
Target: 5'- aAGGUgCCCgcaccggcggcggcgGCCGAGGUGacccGCACGAUCg -3' miRNA: 3'- -UCUA-GGG---------------CGGCUCCACac--CGUGCUGG- -5' |
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12951 | 3' | -58.6 | NC_003387.1 | + | 36005 | 0.69 | 0.37449 |
Target: 5'- cGAUCgaCGgCGAGGUcGUGGUGCG-CCg -3' miRNA: 3'- uCUAGg-GCgGCUCCA-CACCGUGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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