miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12951 3' -58.6 NC_003387.1 + 49294 0.71 0.287172
Target:  5'- cAGGUgCUCGCCGAGcacgccgagGGCACGGCCc -3'
miRNA:   3'- -UCUA-GGGCGGCUCcaca-----CCGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 32615 0.66 0.547445
Target:  5'- cGggCUCGCCGcGGg--GGCGCuGACCc -3'
miRNA:   3'- uCuaGGGCGGCuCCacaCCGUG-CUGG- -5'
12951 3' -58.6 NC_003387.1 + 51194 0.66 0.548491
Target:  5'- cGAUCCuCGgcaCCGAGGUGcugagccugcacgucGGCcGCGGCCu -3'
miRNA:   3'- uCUAGG-GC---GGCUCCACa--------------CCG-UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 37911 0.67 0.506187
Target:  5'- cGA-CCCGCUGcccGGUGgcucGGCACcGCCg -3'
miRNA:   3'- uCUaGGGCGGCu--CCACa---CCGUGcUGG- -5'
12951 3' -58.6 NC_003387.1 + 51775 0.66 0.557933
Target:  5'- ---aCCCGcCCGAcuGGUGgcugGGCGuCGAUCg -3'
miRNA:   3'- ucuaGGGC-GGCU--CCACa---CCGU-GCUGG- -5'
12951 3' -58.6 NC_003387.1 + 50646 0.66 0.568477
Target:  5'- --uUCaCCGCCGAGGaccgcGUcGCGCaGACCa -3'
miRNA:   3'- ucuAG-GGCGGCUCCa----CAcCGUG-CUGG- -5'
12951 3' -58.6 NC_003387.1 + 44609 0.66 0.53702
Target:  5'- cGAcgCCGUCGGGccGUGGCGCGAgCg -3'
miRNA:   3'- uCUagGGCGGCUCcaCACCGUGCUgG- -5'
12951 3' -58.6 NC_003387.1 + 41751 0.76 0.128856
Target:  5'- cGG-CUgGCCGcGGUGUGGUGCGACCu -3'
miRNA:   3'- uCUaGGgCGGCuCCACACCGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 39617 0.72 0.254962
Target:  5'- uGGA--UCGCCGAGGUGgcGGCAUGAgCCu -3'
miRNA:   3'- -UCUagGGCGGCUCCACa-CCGUGCU-GG- -5'
12951 3' -58.6 NC_003387.1 + 1519 0.75 0.151521
Target:  5'- cGGUCgugaaGUCGGGGcgGUGGCACGACCu -3'
miRNA:   3'- uCUAGgg---CGGCUCCa-CACCGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 33601 1.11 0.000361
Target:  5'- aAGAUCCCGCCGAGGUGUGGCACGACCu -3'
miRNA:   3'- -UCUAGGGCGGCUCCACACCGUGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 35627 0.77 0.109361
Target:  5'- aGGAgCCCGCCGAGGcggccgGgcgGGCACuGGCCg -3'
miRNA:   3'- -UCUaGGGCGGCUCCa-----Ca--CCGUG-CUGG- -5'
12951 3' -58.6 NC_003387.1 + 26121 0.67 0.506187
Target:  5'- --uUCgCCGCCGAGGcguUGUcaGCACGAgCCa -3'
miRNA:   3'- ucuAG-GGCGGCUCC---ACAc-CGUGCU-GG- -5'
12951 3' -58.6 NC_003387.1 + 1948 0.67 0.466315
Target:  5'- uGAUCCgGCCGcGGGUcUGGC-CGGgCa -3'
miRNA:   3'- uCUAGGgCGGC-UCCAcACCGuGCUgG- -5'
12951 3' -58.6 NC_003387.1 + 22571 0.68 0.409747
Target:  5'- cGggCCUgGUCGAGG-GUGGCcucgguGCGGCCa -3'
miRNA:   3'- uCuaGGG-CGGCUCCaCACCG------UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 39233 0.73 0.215585
Target:  5'- cGAaCCCGCCGGGGcugucgGUGGUgcccuccucgccgucGCGGCCc -3'
miRNA:   3'- uCUaGGGCGGCUCCa-----CACCG---------------UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 46771 0.68 0.40074
Target:  5'- --cUCCCGCCGAGGUcgGUccucGCGCGgaaACCu -3'
miRNA:   3'- ucuAGGGCGGCUCCA--CAc---CGUGC---UGG- -5'
12951 3' -58.6 NC_003387.1 + 49345 0.74 0.187351
Target:  5'- gGGAUgCCCGCCGAGGccagcuUGGUgaugccgucgACGACCg -3'
miRNA:   3'- -UCUA-GGGCGGCUCCac----ACCG----------UGCUGG- -5'
12951 3' -58.6 NC_003387.1 + 51465 0.7 0.341346
Target:  5'- ---cCUCGCCGGGGUccgucggcuucgGUGGCGuacCGGCCa -3'
miRNA:   3'- ucuaGGGCGGCUCCA------------CACCGU---GCUGG- -5'
12951 3' -58.6 NC_003387.1 + 27145 0.72 0.242441
Target:  5'- ---gCCCGCCGGGGUc-GGCGCcGCCg -3'
miRNA:   3'- ucuaGGGCGGCUCCAcaCCGUGcUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.