miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12951 5' -59.3 NC_003387.1 + 1357 0.66 0.425271
Target:  5'- -aGGACGCCgaccccgACGacCGCUcGCAGuGGCGc -3'
miRNA:   3'- uaCCUGCGGa------UGU--GCGA-CGUC-CCGUa -5'
12951 5' -59.3 NC_003387.1 + 41135 0.66 0.424314
Target:  5'- aGUGGcagcGCGCCgacgGC-CGCUGCgagugucAGGGCGa -3'
miRNA:   3'- -UACC----UGCGGa---UGuGCGACG-------UCCCGUa -5'
12951 5' -59.3 NC_003387.1 + 50961 0.66 0.406394
Target:  5'- -cGGGCGCCaGCGcCGCcGCcGGGCu- -3'
miRNA:   3'- uaCCUGCGGaUGU-GCGaCGuCCCGua -5'
12951 5' -59.3 NC_003387.1 + 32150 0.66 0.406394
Target:  5'- uGUGG-UGcCCUGCACGCccacCGGGGCGUu -3'
miRNA:   3'- -UACCuGC-GGAUGUGCGac--GUCCCGUA- -5'
12951 5' -59.3 NC_003387.1 + 5205 0.66 0.388052
Target:  5'- -cGGuCGcCCUGCAUGaaCUGCGGGGUg- -3'
miRNA:   3'- uaCCuGC-GGAUGUGC--GACGUCCCGua -5'
12951 5' -59.3 NC_003387.1 + 50807 0.66 0.388052
Target:  5'- -cGGGCGUUUACGgGCgccaGCgAGGGCGUc -3'
miRNA:   3'- uaCCUGCGGAUGUgCGa---CG-UCCCGUA- -5'
12951 5' -59.3 NC_003387.1 + 12003 0.66 0.388052
Target:  5'- uGUGGcGCgGCCUggucgacacggcGCAUGCggugugGCAGGGCAUc -3'
miRNA:   3'- -UACC-UG-CGGA------------UGUGCGa-----CGUCCCGUA- -5'
12951 5' -59.3 NC_003387.1 + 14191 0.66 0.388052
Target:  5'- -aGGGCGUCgugaugGCGCGCgaGCuugAGGGCGUc -3'
miRNA:   3'- uaCCUGCGGa-----UGUGCGa-CG---UCCCGUA- -5'
12951 5' -59.3 NC_003387.1 + 34622 0.68 0.312504
Target:  5'- cAUGGcCGCCUACcuGCGCaGCcucGGGCAc -3'
miRNA:   3'- -UACCuGCGGAUG--UGCGaCGu--CCCGUa -5'
12951 5' -59.3 NC_003387.1 + 10 0.68 0.297308
Target:  5'- -gGGGCGCCgcgauCGUUcGCGGGGCAc -3'
miRNA:   3'- uaCCUGCGGaugu-GCGA-CGUCCCGUa -5'
12951 5' -59.3 NC_003387.1 + 46211 0.68 0.297308
Target:  5'- -cGGGCGUCggaACAUGCUGCagcaggAGGGCu- -3'
miRNA:   3'- uaCCUGCGGa--UGUGCGACG------UCCCGua -5'
12951 5' -59.3 NC_003387.1 + 3561 0.68 0.289928
Target:  5'- -cGcGAcCGCCUGCGCGCUGguGuGCAc -3'
miRNA:   3'- uaC-CU-GCGGAUGUGCGACguCcCGUa -5'
12951 5' -59.3 NC_003387.1 + 30699 0.69 0.282692
Target:  5'- -gGGGCGUUuucgUGCGC-CUGCGGGGCGc -3'
miRNA:   3'- uaCCUGCGG----AUGUGcGACGUCCCGUa -5'
12951 5' -59.3 NC_003387.1 + 21214 0.69 0.275599
Target:  5'- cGUGGAacaGCgUGCGgGC-GCAGGGCGa -3'
miRNA:   3'- -UACCUg--CGgAUGUgCGaCGUCCCGUa -5'
12951 5' -59.3 NC_003387.1 + 28075 0.69 0.275599
Target:  5'- cUGG-CGaCCU-CGCGCaGCAGGGCGa -3'
miRNA:   3'- uACCuGC-GGAuGUGCGaCGUCCCGUa -5'
12951 5' -59.3 NC_003387.1 + 34795 0.69 0.275599
Target:  5'- -cGGGCGCCUugGUGUUGUcguagucgGGGGCGUc -3'
miRNA:   3'- uaCCUGCGGAugUGCGACG--------UCCCGUA- -5'
12951 5' -59.3 NC_003387.1 + 43287 0.69 0.255177
Target:  5'- cAUGGACGUgCUcaGCGCGgUGCuGGGCGa -3'
miRNA:   3'- -UACCUGCG-GA--UGUGCgACGuCCCGUa -5'
12951 5' -59.3 NC_003387.1 + 1625 0.73 0.137193
Target:  5'- uGUGGGCaGCCUcgcgcggguuGCGCGCUGUuuuGGGCAc -3'
miRNA:   3'- -UACCUG-CGGA----------UGUGCGACGu--CCCGUa -5'
12951 5' -59.3 NC_003387.1 + 33635 1.03 0.000721
Target:  5'- gAUGGACGCCUACACGCUGCAGGGCAUc -3'
miRNA:   3'- -UACCUGCGGAUGUGCGACGUCCCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.