miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 3' -56.5 NC_003387.1 + 19458 0.66 0.66265
Target:  5'- gGAUCgGCG-GCAGGCCGGgCaggacgucgUCGAGCa -3'
miRNA:   3'- -CUAGaCGCgCGUUUGGCUgG---------GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 35529 0.66 0.66265
Target:  5'- --gUUGCGCGaCAAcCUGGCCCgccagGAGCa -3'
miRNA:   3'- cuaGACGCGC-GUUuGGCUGGGg----CUCG- -5'
12952 3' -56.5 NC_003387.1 + 42739 0.66 0.66265
Target:  5'- cGUCaggGCGUGCucgGAUCGgcugcgcugguGCCCCGAGUc -3'
miRNA:   3'- cUAGa--CGCGCGu--UUGGC-----------UGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 40499 0.66 0.66265
Target:  5'- --gCUGCGCugGCGAccGCCGgugGCCcggcaCCGAGCa -3'
miRNA:   3'- cuaGACGCG--CGUU--UGGC---UGG-----GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 32518 0.66 0.66265
Target:  5'- --gCUGCGUGCAcgcCCGGCCgUGcgaGGCg -3'
miRNA:   3'- cuaGACGCGCGUuu-GGCUGGgGC---UCG- -5'
12952 3' -56.5 NC_003387.1 + 25580 0.66 0.66265
Target:  5'- ----gGCG-GC--GCCGACCCCG-GCg -3'
miRNA:   3'- cuagaCGCgCGuuUGGCUGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 24876 0.66 0.661558
Target:  5'- cGAUCgugGCGcCGCGgcugucgAACuCGACCgaCGGGCg -3'
miRNA:   3'- -CUAGa--CGC-GCGU-------UUG-GCUGGg-GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 40947 0.66 0.651727
Target:  5'- uGGUCgccaagGUGCGCGacgcGAUCGAggCCGAGCu -3'
miRNA:   3'- -CUAGa-----CGCGCGU----UUGGCUggGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 20106 0.66 0.651727
Target:  5'- gGGUCaGCGCccccGCGG--CGAgCCCGAGCa -3'
miRNA:   3'- -CUAGaCGCG----CGUUugGCUgGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 47750 0.66 0.651727
Target:  5'- cGAcCUGCuGCGCGAGCaCGGCCugaCCG-GCn -3'
miRNA:   3'- -CUaGACG-CGCGUUUG-GCUGG---GGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 51334 0.66 0.651727
Target:  5'- -uUCgaGCGCGacc-CCGACCCgcUGAGCg -3'
miRNA:   3'- cuAGa-CGCGCguuuGGCUGGG--GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 12248 0.66 0.651727
Target:  5'- ----aGCGUGCAc-CCGAUCCCGAa- -3'
miRNA:   3'- cuagaCGCGCGUuuGGCUGGGGCUcg -5'
12952 3' -56.5 NC_003387.1 + 49919 0.66 0.648446
Target:  5'- --gCUGCGCGUc-GCCGaaaagucagcaaacGCCCUGAGg -3'
miRNA:   3'- cuaGACGCGCGuuUGGC--------------UGGGGCUCg -5'
12952 3' -56.5 NC_003387.1 + 32225 0.66 0.645164
Target:  5'- cGcgCUGCGCGagcgcgacgagcuGGCCGACCgCCuGGCc -3'
miRNA:   3'- -CuaGACGCGCgu-----------UUGGCUGG-GGcUCG- -5'
12952 3' -56.5 NC_003387.1 + 10549 0.66 0.640786
Target:  5'- cGUCUGa-CGCAGAUCGACUCgGcGCa -3'
miRNA:   3'- cUAGACgcGCGUUUGGCUGGGgCuCG- -5'
12952 3' -56.5 NC_003387.1 + 28438 0.66 0.640786
Target:  5'- uGAUCgGCGCGCAcGCCGAggCgGcGGCa -3'
miRNA:   3'- -CUAGaCGCGCGUuUGGCUggGgC-UCG- -5'
12952 3' -56.5 NC_003387.1 + 33443 0.66 0.640786
Target:  5'- --gCUGCGCGCc-ACC-ACCUCGcGCa -3'
miRNA:   3'- cuaGACGCGCGuuUGGcUGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 4591 0.66 0.640786
Target:  5'- cGcgCUGCGCGCGggucugccacguGAUCGGCgagccaCCgCGGGCg -3'
miRNA:   3'- -CuaGACGCGCGU------------UUGGCUG------GG-GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 14523 0.66 0.640786
Target:  5'- --cCUGCGUGCGGuACuCGGCggCCGGGCc -3'
miRNA:   3'- cuaGACGCGCGUU-UG-GCUGg-GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 19241 0.66 0.640786
Target:  5'- cGAUCgcGgGCGCcGACCG-CCUCG-GCg -3'
miRNA:   3'- -CUAGa-CgCGCGuUUGGCuGGGGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.