miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 3' -56.5 NC_003387.1 + 19458 0.66 0.66265
Target:  5'- gGAUCgGCG-GCAGGCCGGgCaggacgucgUCGAGCa -3'
miRNA:   3'- -CUAGaCGCgCGUUUGGCUgG---------GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 36392 0.66 0.607957
Target:  5'- aGGUC-GC-CGCGGucaacaucgacACCGGCgCCGAGCu -3'
miRNA:   3'- -CUAGaCGcGCGUU-----------UGGCUGgGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 33443 0.66 0.640786
Target:  5'- --gCUGCGCGCc-ACC-ACCUCGcGCa -3'
miRNA:   3'- cuaGACGCGCGuuUGGcUGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 42739 0.66 0.66265
Target:  5'- cGUCaggGCGUGCucgGAUCGgcugcgcugguGCCCCGAGUc -3'
miRNA:   3'- cUAGa--CGCGCGu--UUGGC-----------UGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 33068 0.66 0.629838
Target:  5'- ---gUGCGCGCcAAgCG-CCgCGAGCg -3'
miRNA:   3'- cuagACGCGCGuUUgGCuGGgGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 48321 0.66 0.612329
Target:  5'- aAUCgaggcgGCGCGCGAgcgcgaguaucaggaGCaccuGGCCgCCGAGCg -3'
miRNA:   3'- cUAGa-----CGCGCGUU---------------UGg---CUGG-GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 37810 0.66 0.618892
Target:  5'- cGGUCgcagcaGCGCGCGAucggGCCGAgCgaggUCGGGCa -3'
miRNA:   3'- -CUAGa-----CGCGCGUU----UGGCUgG----GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 50451 0.66 0.629838
Target:  5'- cGAg--GaCGaCGuCGAGCCGACCCCG-GCc -3'
miRNA:   3'- -CUagaC-GC-GC-GUUUGGCUGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 15133 0.66 0.639692
Target:  5'- --cCUGUGCGCGAcccgauuGCCGcguacaccuACCUCGAcGCg -3'
miRNA:   3'- cuaGACGCGCGUU-------UGGC---------UGGGGCU-CG- -5'
12952 3' -56.5 NC_003387.1 + 5136 0.66 0.607957
Target:  5'- ----aGCGUGCGAcCCGAUCggUCGAGCu -3'
miRNA:   3'- cuagaCGCGCGUUuGGCUGG--GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 2070 0.66 0.607957
Target:  5'- uGGUCUGCGCGac-GCgGuCCUCG-GCg -3'
miRNA:   3'- -CUAGACGCGCguuUGgCuGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 13955 0.66 0.618892
Target:  5'- ----aGCGUGUGAuuGCCGcCCCgCGGGCa -3'
miRNA:   3'- cuagaCGCGCGUU--UGGCuGGG-GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 24876 0.66 0.661558
Target:  5'- cGAUCgugGCGcCGCGgcugucgAACuCGACCgaCGGGCg -3'
miRNA:   3'- -CUAGa--CGC-GCGU-------UUG-GCUGGg-GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 20106 0.66 0.651727
Target:  5'- gGGUCaGCGCccccGCGG--CGAgCCCGAGCa -3'
miRNA:   3'- -CUAGaCGCG----CGUUugGCUgGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 19241 0.66 0.640786
Target:  5'- cGAUCgcGgGCGCcGACCG-CCUCG-GCg -3'
miRNA:   3'- -CUAGa-CgCGCGuUUGGCuGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 19874 0.66 0.640786
Target:  5'- aGUCgGCGaCGCgGAACCGccccGCCCCGcgguGCg -3'
miRNA:   3'- cUAGaCGC-GCG-UUUGGC----UGGGGCu---CG- -5'
12952 3' -56.5 NC_003387.1 + 14523 0.66 0.640786
Target:  5'- --cCUGCGUGCGGuACuCGGCggCCGGGCc -3'
miRNA:   3'- cuaGACGCGCGUU-UG-GCUGg-GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 4591 0.66 0.640786
Target:  5'- cGcgCUGCGCGCGggucugccacguGAUCGGCgagccaCCgCGGGCg -3'
miRNA:   3'- -CuaGACGCGCGU------------UUGGCUG------GG-GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 28438 0.66 0.640786
Target:  5'- uGAUCgGCGCGCAcGCCGAggCgGcGGCa -3'
miRNA:   3'- -CUAGaCGCGCGUuUGGCUggGgC-UCG- -5'
12952 3' -56.5 NC_003387.1 + 19931 0.66 0.629838
Target:  5'- --gCUGCGC-CAggUCGACCCgGcGGUa -3'
miRNA:   3'- cuaGACGCGcGUuuGGCUGGGgC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.