Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12952 | 3' | -56.5 | NC_003387.1 | + | 33915 | 1.03 | 0.002158 |
Target: 5'- cGAUCUGCGCGCAAACCG-CCCCGAGCu -3' miRNA: 3'- -CUAGACGCGCGUUUGGCuGGGGCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 50949 | 0.8 | 0.092914 |
Target: 5'- uGAUCUGaacgccaGCGCGAAgCGcCCCCGAGCc -3' miRNA: 3'- -CUAGACg------CGCGUUUgGCuGGGGCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 38933 | 0.76 | 0.178687 |
Target: 5'- gGAUCUGCgagcgcaGCGCGaccggguccauaccGACCGGCCCCGAa- -3' miRNA: 3'- -CUAGACG-------CGCGU--------------UUGGCUGGGGCUcg -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 16980 | 0.76 | 0.180621 |
Target: 5'- --cCUG-GCGCGGGCgggcugcgucauCGACCCCGAGCg -3' miRNA: 3'- cuaGACgCGCGUUUG------------GCUGGGGCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 27684 | 0.75 | 0.200467 |
Target: 5'- -cUCUG-GCGCGAgugcugcGCCGACCCCGAcagGCc -3' miRNA: 3'- cuAGACgCGCGUU-------UGGCUGGGGCU---CG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 45914 | 0.75 | 0.211921 |
Target: 5'- cGAUCUGCaguaCGUcgGCaCGugCCCGAGCg -3' miRNA: 3'- -CUAGACGc---GCGuuUG-GCugGGGCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 18815 | 0.74 | 0.223349 |
Target: 5'- cGGUUUGCGCGCAGAUCG-CCgaCGGGUc -3' miRNA: 3'- -CUAGACGCGCGUUUGGCuGGg-GCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 3944 | 0.74 | 0.235296 |
Target: 5'- cGAUCaGCG-GCGAGCUGGCUgcgCCGAGCa -3' miRNA: 3'- -CUAGaCGCgCGUUUGGCUGG---GGCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 42526 | 0.73 | 0.247775 |
Target: 5'- cGAUCacgcgGCcCGCAuGACCGACgCCGAGCu -3' miRNA: 3'- -CUAGa----CGcGCGU-UUGGCUGgGGCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 5944 | 0.73 | 0.247775 |
Target: 5'- aGGUUUcCGCGCGagGACCGACCUCG-GCg -3' miRNA: 3'- -CUAGAcGCGCGU--UUGGCUGGGGCuCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 32724 | 0.73 | 0.254218 |
Target: 5'- aGGUCgaacgGCGcCGCGGAgaaCGGCCCCGAGg -3' miRNA: 3'- -CUAGa----CGC-GCGUUUg--GCUGGGGCUCg -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 41356 | 0.73 | 0.260797 |
Target: 5'- ----cGCGCGaaaugcaAGGCCGACgCCGAGCg -3' miRNA: 3'- cuagaCGCGCg------UUUGGCUGgGGCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 49334 | 0.73 | 0.260797 |
Target: 5'- uGAUC-GCGCGCAAGCUGAgCgUCGGGUa -3' miRNA: 3'- -CUAGaCGCGCGUUUGGCU-GgGGCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 22850 | 0.73 | 0.273679 |
Target: 5'- cGAUCgGCGCGCAAggcgcacugaucaGCCugcacucggcuGACCCCG-GCa -3' miRNA: 3'- -CUAGaCGCGCGUU-------------UGG-----------CUGGGGCuCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 7832 | 0.73 | 0.274371 |
Target: 5'- aGGUCgcccgGCGCGCAGgcggaaucGCCGAcgcCCCCGAcgGCu -3' miRNA: 3'- -CUAGa----CGCGCGUU--------UGGCU---GGGGCU--CG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 28024 | 0.73 | 0.274371 |
Target: 5'- ----aGCGCgGCAAGCCGAUCCucggCGAGCu -3' miRNA: 3'- cuagaCGCG-CGUUUGGCUGGG----GCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 3650 | 0.73 | 0.281368 |
Target: 5'- --cCUGCGCGCcgcGAGCCuGCCCggUGAGCg -3' miRNA: 3'- cuaGACGCGCG---UUUGGcUGGG--GCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 39491 | 0.73 | 0.281368 |
Target: 5'- ---aUGCGCaCAAG-CGACCCCGAGUa -3' miRNA: 3'- cuagACGCGcGUUUgGCUGGGGCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 24741 | 0.73 | 0.281368 |
Target: 5'- aAUCgaggGCGcCGCAAcggcACCGGCCaagCCGAGCa -3' miRNA: 3'- cUAGa---CGC-GCGUU----UGGCUGG---GGCUCG- -5' |
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12952 | 3' | -56.5 | NC_003387.1 | + | 52396 | 0.72 | 0.288505 |
Target: 5'- gGAUCUugGCGUGCGugucGCCGGgCUCGGGCu -3' miRNA: 3'- -CUAGA--CGCGCGUu---UGGCUgGGGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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