miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 3' -56.5 NC_003387.1 + 364 0.67 0.552693
Target:  5'- cGAUCUGCGCGagcgguuCCGcGCCCaucucguCGAGUg -3'
miRNA:   3'- -CUAGACGCGCguuu---GGC-UGGG-------GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 743 0.67 0.575311
Target:  5'- cGUCggUGCGCGCGacguguggcgcGAUgGGCCUCGGGUu -3'
miRNA:   3'- cUAG--ACGCGCGU-----------UUGgCUGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 1933 0.72 0.303205
Target:  5'- cGAUCgUGCaGCGCAugauCCGGCCgCGGGUc -3'
miRNA:   3'- -CUAG-ACG-CGCGUuu--GGCUGGgGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 2070 0.66 0.607957
Target:  5'- uGGUCUGCGCGac-GCgGuCCUCG-GCg -3'
miRNA:   3'- -CUAGACGCGCguuUGgCuGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 2758 0.67 0.597043
Target:  5'- ----cGUGCGCGAggucACCGACgugaUCGAGCa -3'
miRNA:   3'- cuagaCGCGCGUU----UGGCUGg---GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 2964 0.7 0.412535
Target:  5'- uGAUCaGCGgGUGGACCGGCagcaaggCCGAGUg -3'
miRNA:   3'- -CUAGaCGCgCGUUUGGCUGg------GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 3399 0.7 0.400555
Target:  5'- --cUUGCGCGCGAucaugcucgggGCCGugCCCucggcgugcucggcGAGCa -3'
miRNA:   3'- cuaGACGCGCGUU-----------UGGCugGGG--------------CUCG- -5'
12952 3' -56.5 NC_003387.1 + 3466 0.71 0.334315
Target:  5'- cGGUCgaUGCGCGuCAccCCGGCgUCGAGCa -3'
miRNA:   3'- -CUAG--ACGCGC-GUuuGGCUGgGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 3650 0.73 0.281368
Target:  5'- --cCUGCGCGCcgcGAGCCuGCCCggUGAGCg -3'
miRNA:   3'- cuaGACGCGCG---UUUGGcUGGG--GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 3882 0.68 0.511464
Target:  5'- ----gGCGUGCAcGCCGugCgucgcgCCGAGCa -3'
miRNA:   3'- cuagaCGCGCGUuUGGCugG------GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 3944 0.74 0.235296
Target:  5'- cGAUCaGCG-GCGAGCUGGCUgcgCCGAGCa -3'
miRNA:   3'- -CUAGaCGCgCGUUUGGCUGG---GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 4452 0.71 0.350724
Target:  5'- ----cGCGCcgaaggcCGAGCCGACCgCCGAGCc -3'
miRNA:   3'- cuagaCGCGc------GUUUGGCUGG-GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 4591 0.66 0.640786
Target:  5'- cGcgCUGCGCGCGggucugccacguGAUCGGCgagccaCCgCGGGCg -3'
miRNA:   3'- -CuaGACGCGCGU------------UUGGCUG------GG-GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 5136 0.66 0.607957
Target:  5'- ----aGCGUGCGAcCCGAUCggUCGAGCu -3'
miRNA:   3'- cuagaCGCGCGUUuGGCUGG--GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 5637 0.67 0.586158
Target:  5'- ----cGCGCcgaGCAAGCCGagaagcGCgCCGAGCa -3'
miRNA:   3'- cuagaCGCG---CGUUUGGC------UGgGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 5944 0.73 0.247775
Target:  5'- aGGUUUcCGCGCGagGACCGACCUCG-GCg -3'
miRNA:   3'- -CUAGAcGCGCGU--UUGGCUGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 7077 0.67 0.54308
Target:  5'- gGAUCUGacggaaGCggaGCAGACgGACCUaagCGAGCu -3'
miRNA:   3'- -CUAGACg-----CG---CGUUUGgCUGGG---GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 7736 0.72 0.310006
Target:  5'- cGAUg-GCGCGCAAACCGcuugacaugcccaACUCgGAGCa -3'
miRNA:   3'- -CUAgaCGCGCGUUUGGC-------------UGGGgCUCG- -5'
12952 3' -56.5 NC_003387.1 + 7832 0.73 0.274371
Target:  5'- aGGUCgcccgGCGCGCAGgcggaaucGCCGAcgcCCCCGAcgGCu -3'
miRNA:   3'- -CUAGa----CGCGCGUU--------UGGCU---GGGGCU--CG- -5'
12952 3' -56.5 NC_003387.1 + 9375 0.68 0.511464
Target:  5'- -uUCgUGC-CGCuc-CCGGCCCgCGAGCa -3'
miRNA:   3'- cuAG-ACGcGCGuuuGGCUGGG-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.