miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 3' -56.5 NC_003387.1 + 33915 1.03 0.002158
Target:  5'- cGAUCUGCGCGCAAACCG-CCCCGAGCu -3'
miRNA:   3'- -CUAGACGCGCGUUUGGCuGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 26146 0.72 0.318475
Target:  5'- --gCU-CGCGCGGcCUGACCCCGAGg -3'
miRNA:   3'- cuaGAcGCGCGUUuGGCUGGGGCUCg -5'
12952 3' -56.5 NC_003387.1 + 27918 0.71 0.342449
Target:  5'- cGAgcugCUGCGC-CAggUCGGCcgcgaCCCGAGCg -3'
miRNA:   3'- -CUa---GACGCGcGUuuGGCUG-----GGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 42739 0.66 0.66265
Target:  5'- cGUCaggGCGUGCucgGAUCGgcugcgcugguGCCCCGAGUc -3'
miRNA:   3'- cUAGa--CGCGCGu--UUGGC-----------UGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 45914 0.75 0.211921
Target:  5'- cGAUCUGCaguaCGUcgGCaCGugCCCGAGCg -3'
miRNA:   3'- -CUAGACGc---GCGuuUG-GCugGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 5944 0.73 0.247775
Target:  5'- aGGUUUcCGCGCGagGACCGACCUCG-GCg -3'
miRNA:   3'- -CUAGAcGCGCGU--UUGGCUGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 49334 0.73 0.260797
Target:  5'- uGAUC-GCGCGCAAGCUGAgCgUCGGGUa -3'
miRNA:   3'- -CUAGaCGCGCGUUUGGCU-GgGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 41356 0.73 0.260797
Target:  5'- ----cGCGCGaaaugcaAGGCCGACgCCGAGCg -3'
miRNA:   3'- cuagaCGCGCg------UUUGGCUGgGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 7832 0.73 0.274371
Target:  5'- aGGUCgcccgGCGCGCAGgcggaaucGCCGAcgcCCCCGAcgGCu -3'
miRNA:   3'- -CUAGa----CGCGCGUU--------UGGCU---GGGGCU--CG- -5'
12952 3' -56.5 NC_003387.1 + 19380 0.72 0.310769
Target:  5'- --cCUGCGgGuCAAACCGGCacgaCCGGGUg -3'
miRNA:   3'- cuaGACGCgC-GUUUGGCUGg---GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 39491 0.73 0.281368
Target:  5'- ---aUGCGCaCAAG-CGACCCCGAGUa -3'
miRNA:   3'- cuagACGCGcGUUUgGCUGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 28024 0.73 0.274371
Target:  5'- ----aGCGCgGCAAGCCGAUCCucggCGAGCu -3'
miRNA:   3'- cuagaCGCG-CGUUUGGCUGGG----GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 50949 0.8 0.092914
Target:  5'- uGAUCUGaacgccaGCGCGAAgCGcCCCCGAGCc -3'
miRNA:   3'- -CUAGACg------CGCGUUUgGCuGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 11392 0.72 0.295784
Target:  5'- cGAUCgGCGC-CAcgcuggccgcGAUCGGCCCCGAGg -3'
miRNA:   3'- -CUAGaCGCGcGU----------UUGGCUGGGGCUCg -5'
12952 3' -56.5 NC_003387.1 + 16980 0.76 0.180621
Target:  5'- --cCUG-GCGCGGGCgggcugcgucauCGACCCCGAGCg -3'
miRNA:   3'- cuaGACgCGCGUUUG------------GCUGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 22850 0.73 0.273679
Target:  5'- cGAUCgGCGCGCAAggcgcacugaucaGCCugcacucggcuGACCCCG-GCa -3'
miRNA:   3'- -CUAGaCGCGCGUU-------------UGG-----------CUGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 7736 0.72 0.310006
Target:  5'- cGAUg-GCGCGCAAACCGcuugacaugcccaACUCgGAGCa -3'
miRNA:   3'- -CUAgaCGCGCGUUUGGC-------------UGGGgCUCG- -5'
12952 3' -56.5 NC_003387.1 + 9455 0.71 0.342449
Target:  5'- -uUCUGCGCcacguucgacGCcGACgauuuCGACCCCGAGUa -3'
miRNA:   3'- cuAGACGCG----------CGuUUG-----GCUGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 27684 0.75 0.200467
Target:  5'- -cUCUG-GCGCGAgugcugcGCCGACCCCGAcagGCc -3'
miRNA:   3'- cuAGACgCGCGUU-------UGGCUGGGGCU---CG- -5'
12952 3' -56.5 NC_003387.1 + 42526 0.73 0.247775
Target:  5'- cGAUCacgcgGCcCGCAuGACCGACgCCGAGCu -3'
miRNA:   3'- -CUAGa----CGcGCGU-UUGGCUGgGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.