miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 3' -56.5 NC_003387.1 + 19113 0.71 0.350724
Target:  5'- -uUCggagGCGCGCAGucgaucAUCGACCcgaCCGGGCg -3'
miRNA:   3'- cuAGa---CGCGCGUU------UGGCUGG---GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 27918 0.71 0.342449
Target:  5'- cGAgcugCUGCGC-CAggUCGGCcgcgaCCCGAGCg -3'
miRNA:   3'- -CUa---GACGCGcGUuuGGCUG-----GGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 28024 0.73 0.274371
Target:  5'- ----aGCGCgGCAAGCCGAUCCucggCGAGCu -3'
miRNA:   3'- cuagaCGCG-CGUUUGGCUGGG----GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 27684 0.75 0.200467
Target:  5'- -cUCUG-GCGCGAgugcugcGCCGACCCCGAcagGCc -3'
miRNA:   3'- cuAGACgCGCGUU-------UGGCUGGGGCU---CG- -5'
12952 3' -56.5 NC_003387.1 + 51725 0.69 0.431392
Target:  5'- ----cGCaGCGCAu-CCGACCCCggucGAGCg -3'
miRNA:   3'- cuagaCG-CGCGUuuGGCUGGGG----CUCG- -5'
12952 3' -56.5 NC_003387.1 + 13196 0.7 0.411606
Target:  5'- cGAUCgagaaGCGCGgcaaggucaacgaCAAGCUGACCgacgCCGAGCa -3'
miRNA:   3'- -CUAGa----CGCGC-------------GUUUGGCUGG----GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 26146 0.72 0.318475
Target:  5'- --gCU-CGCGCGGcCUGACCCCGAGg -3'
miRNA:   3'- cuaGAcGCGCGUUuGGCUGGGGCUCg -5'
12952 3' -56.5 NC_003387.1 + 16980 0.76 0.180621
Target:  5'- --cCUG-GCGCGGGCgggcugcgucauCGACCCCGAGCg -3'
miRNA:   3'- cuaGACgCGCGUUUG------------GCUGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 36518 0.7 0.394196
Target:  5'- ----gGCaGCGCAGGCUGAgCCCCGAcaGCa -3'
miRNA:   3'- cuagaCG-CGCGUUUGGCU-GGGGCU--CG- -5'
12952 3' -56.5 NC_003387.1 + 50949 0.8 0.092914
Target:  5'- uGAUCUGaacgccaGCGCGAAgCGcCCCCGAGCc -3'
miRNA:   3'- -CUAGACg------CGCGUUUgGCuGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 9455 0.71 0.342449
Target:  5'- -uUCUGCGCcacguucgacGCcGACgauuuCGACCCCGAGUa -3'
miRNA:   3'- cuAGACGCG----------CGuUUG-----GCUGGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 14505 0.7 0.376393
Target:  5'- ----gGCGCGCugucGAUCGACCCgaCGGGCa -3'
miRNA:   3'- cuagaCGCGCGu---UUGGCUGGG--GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 11392 0.72 0.295784
Target:  5'- cGAUCgGCGC-CAcgcuggccgcGAUCGGCCCCGAGg -3'
miRNA:   3'- -CUAGaCGCGcGU----------UUGGCUGGGGCUCg -5'
12952 3' -56.5 NC_003387.1 + 7832 0.73 0.274371
Target:  5'- aGGUCgcccgGCGCGCAGgcggaaucGCCGAcgcCCCCGAcgGCu -3'
miRNA:   3'- -CUAGa----CGCGCGUU--------UGGCU---GGGGCU--CG- -5'
12952 3' -56.5 NC_003387.1 + 49334 0.73 0.260797
Target:  5'- uGAUC-GCGCGCAAGCUGAgCgUCGGGUa -3'
miRNA:   3'- -CUAGaCGCGCGUUUGGCU-GgGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 45914 0.75 0.211921
Target:  5'- cGAUCUGCaguaCGUcgGCaCGugCCCGAGCg -3'
miRNA:   3'- -CUAGACGc---GCGuuUG-GCugGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 42976 0.69 0.441008
Target:  5'- ---aUGCGCGUGAgccugGCCGACCuuGAcGCc -3'
miRNA:   3'- cuagACGCGCGUU-----UGGCUGGggCU-CG- -5'
12952 3' -56.5 NC_003387.1 + 42309 0.69 0.431392
Target:  5'- cGAUCaaggcgugGCGCGaCGAGCaGAUCaCCGAGCg -3'
miRNA:   3'- -CUAGa-------CGCGC-GUUUGgCUGG-GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 35648 0.7 0.4219
Target:  5'- ----gGCGgGCAcuGGCCGACCUCGAccGCg -3'
miRNA:   3'- cuagaCGCgCGU--UUGGCUGGGGCU--CG- -5'
12952 3' -56.5 NC_003387.1 + 2964 0.7 0.412535
Target:  5'- uGAUCaGCGgGUGGACCGGCagcaaggCCGAGUg -3'
miRNA:   3'- -CUAGaCGCgCGUUUGGCUGg------GGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.