miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 3' -56.5 NC_003387.1 + 51228 0.68 0.532463
Target:  5'- --gCUG-GUGCAcGCUGACCuuGGGCc -3'
miRNA:   3'- cuaGACgCGCGUuUGGCUGGggCUCG- -5'
12952 3' -56.5 NC_003387.1 + 9815 0.67 0.597043
Target:  5'- gGcgCUGCaggcuGCGCAuuuuguGCUGGCCCCcGGCc -3'
miRNA:   3'- -CuaGACG-----CGCGUu-----UGGCUGGGGcUCG- -5'
12952 3' -56.5 NC_003387.1 + 34131 0.67 0.586158
Target:  5'- cGUCgcgGUGCGCGAACuCGACgagcaCCaGGGCg -3'
miRNA:   3'- cUAGa--CGCGCGUUUG-GCUGg----GG-CUCG- -5'
12952 3' -56.5 NC_003387.1 + 38226 0.67 0.564511
Target:  5'- cGAUCgacaGCGCGCccuuAgUGGCCucgCCGAGCa -3'
miRNA:   3'- -CUAGa---CGCGCGuu--UgGCUGG---GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 22713 0.67 0.564511
Target:  5'- --cCUGgGCGau-ACCGACCaguCGGGCg -3'
miRNA:   3'- cuaGACgCGCguuUGGCUGGg--GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 15943 0.67 0.564511
Target:  5'- ---gUGCGCGUcgGCCaGCgCCGAGUg -3'
miRNA:   3'- cuagACGCGCGuuUGGcUGgGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 14092 0.67 0.564511
Target:  5'- --aCUGCaGCGCcAGCgCGGCCUgCGGGCc -3'
miRNA:   3'- cuaGACG-CGCGuUUG-GCUGGG-GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 48131 0.67 0.54308
Target:  5'- --gCUGCGCGCGuucgAGCuuguCGGCCUcggCGAGCa -3'
miRNA:   3'- cuaGACGCGCGU----UUG----GCUGGG---GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 50179 0.67 0.542015
Target:  5'- gGAUCUGcCGCgGCGAccgcgugcggaacACCGGCCCCucaucagucGGCg -3'
miRNA:   3'- -CUAGAC-GCG-CGUU-------------UGGCUGGGGc--------UCG- -5'
12952 3' -56.5 NC_003387.1 + 5136 0.66 0.607957
Target:  5'- ----aGCGUGCGAcCCGAUCggUCGAGCu -3'
miRNA:   3'- cuagaCGCGCGUUuGGCUGG--GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 2070 0.66 0.607957
Target:  5'- uGGUCUGCGCGac-GCgGuCCUCG-GCg -3'
miRNA:   3'- -CUAGACGCGCguuUGgCuGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 13955 0.66 0.618892
Target:  5'- ----aGCGUGUGAuuGCCGcCCCgCGGGCa -3'
miRNA:   3'- cuagaCGCGCGUU--UGGCuGGG-GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 24876 0.66 0.661558
Target:  5'- cGAUCgugGCGcCGCGgcugucgAACuCGACCgaCGGGCg -3'
miRNA:   3'- -CUAGa--CGC-GCGU-------UUG-GCUGGg-GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 20106 0.66 0.651727
Target:  5'- gGGUCaGCGCccccGCGG--CGAgCCCGAGCa -3'
miRNA:   3'- -CUAGaCGCG----CGUUugGCUgGGGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 19241 0.66 0.640786
Target:  5'- cGAUCgcGgGCGCcGACCG-CCUCG-GCg -3'
miRNA:   3'- -CUAGa-CgCGCGuUUGGCuGGGGCuCG- -5'
12952 3' -56.5 NC_003387.1 + 19874 0.66 0.640786
Target:  5'- aGUCgGCGaCGCgGAACCGccccGCCCCGcgguGCg -3'
miRNA:   3'- cUAGaCGC-GCG-UUUGGC----UGGGGCu---CG- -5'
12952 3' -56.5 NC_003387.1 + 14523 0.66 0.640786
Target:  5'- --cCUGCGUGCGGuACuCGGCggCCGGGCc -3'
miRNA:   3'- cuaGACGCGCGUU-UG-GCUGg-GGCUCG- -5'
12952 3' -56.5 NC_003387.1 + 4591 0.66 0.640786
Target:  5'- cGcgCUGCGCGCGggucugccacguGAUCGGCgagccaCCgCGGGCg -3'
miRNA:   3'- -CuaGACGCGCGU------------UUGGCUG------GG-GCUCG- -5'
12952 3' -56.5 NC_003387.1 + 28438 0.66 0.640786
Target:  5'- uGAUCgGCGCGCAcGCCGAggCgGcGGCa -3'
miRNA:   3'- -CUAGaCGCGCGUuUGGCUggGgC-UCG- -5'
12952 3' -56.5 NC_003387.1 + 19931 0.66 0.629838
Target:  5'- --gCUGCGC-CAggUCGACCCgGcGGUa -3'
miRNA:   3'- cuaGACGCGcGUuuGGCUGGGgC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.