miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 7651 0.66 0.803179
Target:  5'- aCCGGCccAGGaCGGcccUCGACGCGCucGGCg -3'
miRNA:   3'- -GGCUGuuUCCcGUC---AGCUGUGCG--CUG- -5'
12952 5' -54.2 NC_003387.1 + 2253 0.66 0.803179
Target:  5'- gCCGACGAccucgcGGGCcggGGUCGGCu--CGACg -3'
miRNA:   3'- -GGCUGUUu-----CCCG---UCAGCUGugcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 52481 0.66 0.803179
Target:  5'- cUCGACAAcauuGGGGCGGcUCaccGCAagugcaacCGCGACa -3'
miRNA:   3'- -GGCUGUU----UCCCGUC-AGc--UGU--------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 32711 0.66 0.803179
Target:  5'- aUGACAcAGGGCuucaCGGCGCaCGGCg -3'
miRNA:   3'- gGCUGUuUCCCGuca-GCUGUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 48969 0.66 0.80222
Target:  5'- gCUGGCGAucgugcacgcGGGCAugcggccGUCGAuCGCGUGGCu -3'
miRNA:   3'- -GGCUGUUu---------CCCGU-------CAGCU-GUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 1324 0.66 0.793508
Target:  5'- aCGACGucGGGUAcGUCGAgauuucCGC-CGACg -3'
miRNA:   3'- gGCUGUuuCCCGU-CAGCU------GUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 50903 0.66 0.793508
Target:  5'- gUCGACGucGAGGGCAuGgucaCGAuCAUGCGGa -3'
miRNA:   3'- -GGCUGU--UUCCCGU-Ca---GCU-GUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 25857 0.66 0.793508
Target:  5'- gCGGCAAGGGuggccuGCAGUUGcCGaGCGGCc -3'
miRNA:   3'- gGCUGUUUCC------CGUCAGCuGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 36596 0.66 0.793508
Target:  5'- gCGGCAGuaacccGGCGuUCGACuCGCGGCu -3'
miRNA:   3'- gGCUGUUuc----CCGUcAGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15345 0.66 0.793508
Target:  5'- aCCGACAGcGGGGC-GcCGcCGCcCGACa -3'
miRNA:   3'- -GGCUGUU-UCCCGuCaGCuGUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 35692 0.66 0.793508
Target:  5'- cCCGGCGAGGgcGGCAGcCG-C-CGCGGu -3'
miRNA:   3'- -GGCUGUUUC--CCGUCaGCuGuGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 9117 0.66 0.790573
Target:  5'- gCCGACAuucaaggugcucAAGGGCAcugacggcaaccacGUCGuGCAguacaGCGACg -3'
miRNA:   3'- -GGCUGU------------UUCCCGU--------------CAGC-UGUg----CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 25793 0.66 0.780685
Target:  5'- gCCGAC--AGGGcCAGccCGGCgaacaggaacagcaGCGCGGCg -3'
miRNA:   3'- -GGCUGuuUCCC-GUCa-GCUG--------------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 12821 0.66 0.773671
Target:  5'- aCGuCGAAGGGCGGcaagcCGAaGgGCGGCg -3'
miRNA:   3'- gGCuGUUUCCCGUCa----GCUgUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 33865 0.66 0.773671
Target:  5'- uUGACGAGGuGGC-GUCGugAUGC-ACa -3'
miRNA:   3'- gGCUGUUUC-CCGuCAGCugUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 27924 0.66 0.772663
Target:  5'- gCGGCGugggcgccucgggGGGGGCucGGUCGGgGCGCucGGCg -3'
miRNA:   3'- gGCUGU-------------UUCCCG--UCAGCUgUGCG--CUG- -5'
12952 5' -54.2 NC_003387.1 + 1476 0.66 0.772663
Target:  5'- gUCGAgGGccAGGGC-GUCGACGucgagcaccaggcCGCGGCc -3'
miRNA:   3'- -GGCUgUU--UCCCGuCAGCUGU-------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 42035 0.66 0.763527
Target:  5'- gCCGAgCGccAGGGCgccaAGaUCGAC-CGCGGCg -3'
miRNA:   3'- -GGCU-GUu-UCCCG----UC-AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 9413 0.66 0.753248
Target:  5'- gCCGAgGAGuGGGCcgacgAGUaCGACGCG-GGCg -3'
miRNA:   3'- -GGCUgUUU-CCCG-----UCA-GCUGUGCgCUG- -5'
12952 5' -54.2 NC_003387.1 + 51199 0.67 0.742845
Target:  5'- cUCGGCAccGAGGugcugagccuGCAcGUCGGC-CGCGGCc -3'
miRNA:   3'- -GGCUGU--UUCC----------CGU-CAGCUGuGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.