miRNA display CGI


Results 61 - 80 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 29067 0.68 0.678475
Target:  5'- uUCGGCGuuucuAGGGCcuGUUGACGCGCc-- -3'
miRNA:   3'- -GGCUGUu----UCCCGu-CAGCUGUGCGcug -5'
12952 5' -54.2 NC_003387.1 + 14182 0.68 0.678475
Target:  5'- gCgGGCGuGAGGGC-GUCGugaugGCGCGCGAg -3'
miRNA:   3'- -GgCUGU-UUCCCGuCAGC-----UGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 32746 0.68 0.645542
Target:  5'- aCGGCcccGAGGGCagcguugugaAGUCGACGCGguaccucuugccCGACg -3'
miRNA:   3'- gGCUGu--UUCCCG----------UCAGCUGUGC------------GCUG- -5'
12952 5' -54.2 NC_003387.1 + 24137 0.68 0.645542
Target:  5'- gCGGCGguguugagcuuGAGGGCGucGUCGACG-GCGAUc -3'
miRNA:   3'- gGCUGU-----------UUCCCGU--CAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 41870 0.68 0.678475
Target:  5'- aUCGGCAGAccGCGGUCGgcgaGCugGCGAa -3'
miRNA:   3'- -GGCUGUUUccCGUCAGC----UGugCGCUg -5'
12952 5' -54.2 NC_003387.1 + 39228 0.68 0.681752
Target:  5'- aCCGGCGAacccgccGGGGCuGUCGGuggugcccuccucgcCGuCGCGGCc -3'
miRNA:   3'- -GGCUGUU-------UCCCGuCAGCU---------------GU-GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 6814 0.68 0.688291
Target:  5'- gCCGACGuacugcagaucGGGcGGCAGgucgaucgcccgcUCGGC-CGCGGCg -3'
miRNA:   3'- -GGCUGU-----------UUC-CCGUC-------------AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 11576 0.67 0.721715
Target:  5'- cCUGACAcucgcAGcGGCcGUCGGCGCGCuGCc -3'
miRNA:   3'- -GGCUGUu----UC-CCGuCAGCUGUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 26157 0.67 0.732331
Target:  5'- cCCGGCAccgcccgcAAGGGCGucauGUCGuCGCGUG-Cu -3'
miRNA:   3'- -GGCUGU--------UUCCCGU----CAGCuGUGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 20016 0.67 0.700228
Target:  5'- gCCGugAAGcccugugucauGuGGguGUCGACgacguGCGCGGCg -3'
miRNA:   3'- -GGCugUUU-----------C-CCguCAGCUG-----UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 48259 0.67 0.700228
Target:  5'- gCGGCGGGcucGGCGGUCGGCucggccuucgGCGCGGg -3'
miRNA:   3'- gGCUGUUUc--CCGUCAGCUG----------UGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 8797 0.67 0.707783
Target:  5'- gCCGAuCGAgguuuGGGGUGG-CGACgaaaucggugcgcuGCGCGACa -3'
miRNA:   3'- -GGCU-GUU-----UCCCGUCaGCUG--------------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 41306 0.67 0.700228
Target:  5'- aCCGACGAcagcaccucGGGGCcGaucgCGGCcaGCGUGGCg -3'
miRNA:   3'- -GGCUGUU---------UCCCGuCa---GCUG--UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 34943 0.67 0.709936
Target:  5'- uCCGACAuGGGGaucguuuCGGcCGACGcCGUGAUg -3'
miRNA:   3'- -GGCUGUuUCCC-------GUCaGCUGU-GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 17180 0.67 0.700228
Target:  5'- gCCGcCu--GGGCGG-CGACGgCGCGAa -3'
miRNA:   3'- -GGCuGuuuCCCGUCaGCUGU-GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 18722 0.67 0.709936
Target:  5'- aUGACAGcaGGCAgcucgucGUCGAC-CGCGACc -3'
miRNA:   3'- gGCUGUUucCCGU-------CAGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 16755 0.67 0.742845
Target:  5'- gCCG-CcGAGGGCcuccUCGAC-CGCGGCc -3'
miRNA:   3'- -GGCuGuUUCCCGuc--AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 11038 0.67 0.742845
Target:  5'- gCGACGccGGGUcgGGUUGACGC-CGAa -3'
miRNA:   3'- gGCUGUuuCCCG--UCAGCUGUGcGCUg -5'
12952 5' -54.2 NC_003387.1 + 34110 0.67 0.732331
Target:  5'- gCGGCAGaucGGcGGC-GUCGACGuCGCGGu -3'
miRNA:   3'- gGCUGUU---UC-CCGuCAGCUGU-GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 17439 0.67 0.721715
Target:  5'- gCGGCGAacgauAGGcGcCAGUCGuACcCGCGGCg -3'
miRNA:   3'- gGCUGUU-----UCC-C-GUCAGC-UGuGCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.