miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 33949 1.12 0.000807
Target:  5'- cCCGACAAAGGGCAGUCGACACGCGACg -3'
miRNA:   3'- -GGCUGUUUCCCGUCAGCUGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 35154 0.79 0.176184
Target:  5'- aCGACAccagcGAGGGCGGgcuGACGCGCGAa -3'
miRNA:   3'- gGCUGU-----UUCCCGUCag-CUGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 8142 0.78 0.196258
Target:  5'- cCCGGCc--GGGCAG-CGAC-CGCGACg -3'
miRNA:   3'- -GGCUGuuuCCCGUCaGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 13522 0.76 0.268731
Target:  5'- cCCGACcgcGGGGGCcuGGUCGagcuGCACGCGAa -3'
miRNA:   3'- -GGCUGu--UUCCCG--UCAGC----UGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 28004 0.76 0.275657
Target:  5'- cCCGAUcGAGGGCAc-CGACgaGCGCGGCa -3'
miRNA:   3'- -GGCUGuUUCCCGUcaGCUG--UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 19859 0.75 0.29729
Target:  5'- gCUGGCAGucGGcGCAGUCGGCgACGCGGa -3'
miRNA:   3'- -GGCUGUUu-CC-CGUCAGCUG-UGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 5139 0.74 0.328149
Target:  5'- gCGACGAGGGGCGcUCGGCGC-CGGu -3'
miRNA:   3'- gGCUGUUUCCCGUcAGCUGUGcGCUg -5'
12952 5' -54.2 NC_003387.1 + 1570 0.74 0.335411
Target:  5'- aCGGCGAAGcgccuaacgcccuGGCGGUCGACAUGUcGCa -3'
miRNA:   3'- gGCUGUUUC-------------CCGUCAGCUGUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 19623 0.74 0.336225
Target:  5'- gCCG-CGAAGGGCg--CGACGgGCGGCu -3'
miRNA:   3'- -GGCuGUUUCCCGucaGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15298 0.74 0.336225
Target:  5'- gCGGCuuGGGGCucuuGGUCGcCAuCGCGACg -3'
miRNA:   3'- gGCUGuuUCCCG----UCAGCuGU-GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 44717 0.74 0.352808
Target:  5'- gCCGACAGAGGGCacgagAGUC-ACuguUGCGGCc -3'
miRNA:   3'- -GGCUGUUUCCCG-----UCAGcUGu--GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 39154 0.73 0.395829
Target:  5'- uCCGcGCcGAGGGCguguacuGGUCGGUGCGCGACa -3'
miRNA:   3'- -GGC-UGuUUCCCG-------UCAGCUGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 43465 0.73 0.396742
Target:  5'- aCCGGCGGcgacguccugucGGGGCGGUU--CAUGCGGCa -3'
miRNA:   3'- -GGCUGUU------------UCCCGUCAGcuGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 725 0.73 0.409659
Target:  5'- gCCGACAGgucGGGcaggugcgccaggauGCGGUCGGCcacCGCGGCa -3'
miRNA:   3'- -GGCUGUU---UCC---------------CGUCAGCUGu--GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 44376 0.72 0.414335
Target:  5'- aCCGACGAcccGGUGGUCGACGaggcgaagcucgcCGCGGCu -3'
miRNA:   3'- -GGCUGUUuc-CCGUCAGCUGU-------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 8199 0.72 0.424738
Target:  5'- gCGGCGccGGGCGGccCGGCACGaacaGACg -3'
miRNA:   3'- gGCUGUuuCCCGUCa-GCUGUGCg---CUG- -5'
12952 5' -54.2 NC_003387.1 + 21938 0.72 0.434328
Target:  5'- cUCGGCGgcGGGGGCGG-CGGCAggcgucUGCGGCg -3'
miRNA:   3'- -GGCUGU--UUCCCGUCaGCUGU------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 33753 0.72 0.434328
Target:  5'- cCCGGCA-AGGGCAacggCGGCGcCGCGAg -3'
miRNA:   3'- -GGCUGUuUCCCGUca--GCUGU-GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 729 0.72 0.45388
Target:  5'- gUCGACGGccuGGCcGUCGguGCGCGCGACg -3'
miRNA:   3'- -GGCUGUUuc-CCGuCAGC--UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 13298 0.72 0.45388
Target:  5'- aCGGC-AAGGGCGGcggccUCGACGgcaGCGACc -3'
miRNA:   3'- gGCUGuUUCCCGUC-----AGCUGUg--CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.