Results 21 - 40 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12952 | 5' | -54.2 | NC_003387.1 | + | 22660 | 0.71 | 0.470867 |
Target: 5'- cCCGGCGGccgucAGGGCGcgcucgugggcgguGUCGACG-GCGGCg -3' miRNA: 3'- -GGCUGUU-----UCCCGU--------------CAGCUGUgCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 618 | 0.71 | 0.473899 |
Target: 5'- gCCGAgCAgggcGAGGGCAgcGUCGcCGCcGCGGCa -3' miRNA: 3'- -GGCU-GU----UUCCCGU--CAGCuGUG-CGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 51997 | 0.71 | 0.484073 |
Target: 5'- aCCGACGGccaGGCcGUCGACACgaugccuuGCGGCg -3' miRNA: 3'- -GGCUGUUuc-CCGuCAGCUGUG--------CGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 21227 | 0.71 | 0.494351 |
Target: 5'- gCgGGCGcAGGGCgauccGGUCGGCAuggugcgcCGCGACg -3' miRNA: 3'- -GgCUGUuUCCCG-----UCAGCUGU--------GCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 35886 | 0.71 | 0.494351 |
Target: 5'- gCGuCAAGGGGCAcGUCGACcUGCuGCg -3' miRNA: 3'- gGCuGUUUCCCGU-CAGCUGuGCGcUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 17108 | 0.71 | 0.494351 |
Target: 5'- aCGACGAGcuGGCGGgggCGACGCuCGACg -3' miRNA: 3'- gGCUGUUUc-CCGUCa--GCUGUGcGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 25555 | 0.71 | 0.504728 |
Target: 5'- aCGcCGAGGGGCAGcagcuucgCGACGCGCu-- -3' miRNA: 3'- gGCuGUUUCCCGUCa-------GCUGUGCGcug -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 1686 | 0.71 | 0.504728 |
Target: 5'- aCCGACAccgcGGcGGCGGUCGACugGaucGCu -3' miRNA: 3'- -GGCUGUu---UC-CCGUCAGCUGugCgc-UG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 20171 | 0.71 | 0.504728 |
Target: 5'- gCGuCGAGGGcGCGGUUGAUGCGCuGCu -3' miRNA: 3'- gGCuGUUUCC-CGUCAGCUGUGCGcUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 49062 | 0.71 | 0.515197 |
Target: 5'- gCUGGCGcucaccGGGCAGgcucgCGGCGCGCaGGCg -3' miRNA: 3'- -GGCUGUuu----CCCGUCa----GCUGUGCG-CUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 3514 | 0.7 | 0.525753 |
Target: 5'- aCCGGCAGAuccguugcGGGCucagcaacGUCGACggccgccgccuGCGCGACc -3' miRNA: 3'- -GGCUGUUU--------CCCGu-------CAGCUG-----------UGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 12741 | 0.7 | 0.526813 |
Target: 5'- aCCG-CAAcaccucGGGGCAGUCGAaccucauggaggacCGCGGCa -3' miRNA: 3'- -GGCuGUU------UCCCGUCAGCUgu------------GCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 2522 | 0.7 | 0.540665 |
Target: 5'- aCUGAUGAGGGGCcgguguuccgcacgcGGUCG-C-CGCGGCa -3' miRNA: 3'- -GGCUGUUUCCCG---------------UCAGCuGuGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 22537 | 0.7 | 0.557878 |
Target: 5'- cCCaGGCcGAGGGCuGGcUCGACGCgGUGGCg -3' miRNA: 3'- -GG-CUGuUUCCCG-UC-AGCUGUG-CGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 11253 | 0.7 | 0.567629 |
Target: 5'- gCGACAuuggggcGGGGGCAGUCa--GgGCGGCg -3' miRNA: 3'- gGCUGU-------UUCCCGUCAGcugUgCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 6078 | 0.7 | 0.568715 |
Target: 5'- aUGACGAccgccGGGGCGucGUCGGCAggcucgaacaccUGCGACa -3' miRNA: 3'- gGCUGUU-----UCCCGU--CAGCUGU------------GCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 3823 | 0.69 | 0.579604 |
Target: 5'- gCGACAAcgaucgucAGGGCGGcgCGGUAgGCGGCg -3' miRNA: 3'- gGCUGUU--------UCCCGUCa-GCUGUgCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 15412 | 0.69 | 0.579604 |
Target: 5'- aCGGCAcgucGGcGCGGUCGACgaccGCGcCGACg -3' miRNA: 3'- gGCUGUuu--CC-CGUCAGCUG----UGC-GCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 50987 | 0.69 | 0.579604 |
Target: 5'- gCGGCcGGGGGCGuuuUCGuuugcuguGCACGCGGCa -3' miRNA: 3'- gGCUGuUUCCCGUc--AGC--------UGUGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 15614 | 0.69 | 0.590536 |
Target: 5'- gCCGACGucgagcacgucGAGGGCgcgcacggcgaGGUCGAcCAUGuCGGCg -3' miRNA: 3'- -GGCUGU-----------UUCCCG-----------UCAGCU-GUGC-GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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