miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 29250 0.69 0.590536
Target:  5'- gCCGACAAGGucgaGCAGUaCGAgGCGaUGGCa -3'
miRNA:   3'- -GGCUGUUUCc---CGUCA-GCUgUGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 25278 0.69 0.601503
Target:  5'- gUCGcACAucGGGCAGUCaGCcaGgGCGACg -3'
miRNA:   3'- -GGC-UGUuuCCCGUCAGcUG--UgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 4149 0.69 0.601503
Target:  5'- gUCGGCGAGgcGGGC-GUCGaugcacgccugGCACGUGACc -3'
miRNA:   3'- -GGCUGUUU--CCCGuCAGC-----------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 22316 0.69 0.609196
Target:  5'- cCCGACAGcucGGGCagccacacgaucauGGUCGugAUGCGcaGCg -3'
miRNA:   3'- -GGCUGUUu--CCCG--------------UCAGCugUGCGC--UG- -5'
12952 5' -54.2 NC_003387.1 + 3438 0.69 0.612497
Target:  5'- cUCGGCGAGcaccuGGGCgaccuucacgcGGUCGAUGCGCGuCa -3'
miRNA:   3'- -GGCUGUUU-----CCCG-----------UCAGCUGUGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 33695 0.69 0.612497
Target:  5'- cUCGGCGAccGGCGGUgUGACGCaGUGGCu -3'
miRNA:   3'- -GGCUGUUucCCGUCA-GCUGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 36150 0.69 0.612497
Target:  5'- cCCGACGA--GGCGGUCGGC-CG-GAUg -3'
miRNA:   3'- -GGCUGUUucCCGUCAGCUGuGCgCUG- -5'
12952 5' -54.2 NC_003387.1 + 25898 0.69 0.612497
Target:  5'- cCCGGCGuccAGGGCGGcgcgcucacCGACcaccaGCGCGGCc -3'
miRNA:   3'- -GGCUGUu--UCCCGUCa--------GCUG-----UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 35990 0.69 0.612497
Target:  5'- gCGACGacGAGGGCAcGaUCGACG-GCGAg -3'
miRNA:   3'- gGCUGU--UUCCCGU-C-AGCUGUgCGCUg -5'
12952 5' -54.2 NC_003387.1 + 22036 0.69 0.634526
Target:  5'- gUCGACAuuccguGGGCGGUggcggcgaucacCGGCACcguugGCGACg -3'
miRNA:   3'- -GGCUGUuu----CCCGUCA------------GCUGUG-----CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 33471 0.69 0.634526
Target:  5'- gCCGAaguCGccGaGGCGGUCGGCGCccGCGAUc -3'
miRNA:   3'- -GGCU---GUuuC-CCGUCAGCUGUG--CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 19139 0.68 0.644441
Target:  5'- cCCGACc--GGGCGguggcucGUCGACgcugucgaggGCGCGGCc -3'
miRNA:   3'- -GGCUGuuuCCCGU-------CAGCUG----------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 5020 0.68 0.644441
Target:  5'- aCGGCAggcucacGAGGGCGG-CGcUGCGCGAg -3'
miRNA:   3'- gGCUGU-------UUCCCGUCaGCuGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 24137 0.68 0.645542
Target:  5'- gCGGCGguguugagcuuGAGGGCGucGUCGACG-GCGAUc -3'
miRNA:   3'- gGCUGU-----------UUCCCGU--CAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 32746 0.68 0.645542
Target:  5'- aCGGCcccGAGGGCagcguugugaAGUCGACGCGguaccucuugccCGACg -3'
miRNA:   3'- gGCUGu--UUCCCG----------UCAGCUGUGC------------GCUG- -5'
12952 5' -54.2 NC_003387.1 + 40810 0.68 0.656546
Target:  5'- gCCGAuuucaaggcCAAAGGGCAcaagacggcGcCGAUcguGCGCGACg -3'
miRNA:   3'- -GGCU---------GUUUCCCGU---------CaGCUG---UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 5438 0.68 0.656546
Target:  5'- cUCGACcGAGGGC-GcCGACG-GCGGCc -3'
miRNA:   3'- -GGCUGuUUCCCGuCaGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 14095 0.68 0.667527
Target:  5'- aCGGCGAGuaccuGCGGUCGACG-GCGACc -3'
miRNA:   3'- gGCUGUUUcc---CGUCAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 41870 0.68 0.678475
Target:  5'- aUCGGCAGAccGCGGUCGgcgaGCugGCGAa -3'
miRNA:   3'- -GGCUGUUUccCGUCAGC----UGugCGCUg -5'
12952 5' -54.2 NC_003387.1 + 33675 0.68 0.678475
Target:  5'- gCGACAccGGGaugaUCGGCAgGCGGCc -3'
miRNA:   3'- gGCUGUuuCCCguc-AGCUGUgCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.