miRNA display CGI


Results 61 - 80 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 33675 0.68 0.678475
Target:  5'- gCGACAccGGGaugaUCGGCAgGCGGCc -3'
miRNA:   3'- gGCUGUuuCCCguc-AGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 14182 0.68 0.678475
Target:  5'- gCgGGCGuGAGGGC-GUCGugaugGCGCGCGAg -3'
miRNA:   3'- -GgCUGU-UUCCCGuCAGC-----UGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 41870 0.68 0.678475
Target:  5'- aUCGGCAGAccGCGGUCGgcgaGCugGCGAa -3'
miRNA:   3'- -GGCUGUUUccCGUCAGC----UGugCGCUg -5'
12952 5' -54.2 NC_003387.1 + 39228 0.68 0.681752
Target:  5'- aCCGGCGAacccgccGGGGCuGUCGGuggugcccuccucgcCGuCGCGGCc -3'
miRNA:   3'- -GGCUGUU-------UCCCGuCAGCU---------------GU-GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 6814 0.68 0.688291
Target:  5'- gCCGACGuacugcagaucGGGcGGCAGgucgaucgcccgcUCGGC-CGCGGCg -3'
miRNA:   3'- -GGCUGU-----------UUC-CCGUC-------------AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 40123 0.68 0.688291
Target:  5'- cCCGGCGucGGGCaAGUucaaggcccacggCGACACcgucgGCGGCc -3'
miRNA:   3'- -GGCUGUuuCCCG-UCA-------------GCUGUG-----CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 41081 0.68 0.689379
Target:  5'- gCGAuCGAGGGGCGaUCGugAgcCGCGAg -3'
miRNA:   3'- gGCU-GUUUCCCGUcAGCugU--GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 48259 0.67 0.700228
Target:  5'- gCGGCGGGcucGGCGGUCGGCucggccuucgGCGCGGg -3'
miRNA:   3'- gGCUGUUUc--CCGUCAGCUG----------UGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 41306 0.67 0.700228
Target:  5'- aCCGACGAcagcaccucGGGGCcGaucgCGGCcaGCGUGGCg -3'
miRNA:   3'- -GGCUGUU---------UCCCGuCa---GCUG--UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 20016 0.67 0.700228
Target:  5'- gCCGugAAGcccugugucauGuGGguGUCGACgacguGCGCGGCg -3'
miRNA:   3'- -GGCugUUU-----------C-CCguCAGCUG-----UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 17180 0.67 0.700228
Target:  5'- gCCGcCu--GGGCGG-CGACGgCGCGAa -3'
miRNA:   3'- -GGCuGuuuCCCGUCaGCUGU-GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 8797 0.67 0.707783
Target:  5'- gCCGAuCGAgguuuGGGGUGG-CGACgaaaucggugcgcuGCGCGACa -3'
miRNA:   3'- -GGCU-GUU-----UCCCGUCaGCUG--------------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 34943 0.67 0.709936
Target:  5'- uCCGACAuGGGGaucguuuCGGcCGACGcCGUGAUg -3'
miRNA:   3'- -GGCUGUuUCCC-------GUCaGCUGU-GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 18722 0.67 0.709936
Target:  5'- aUGACAGcaGGCAgcucgucGUCGAC-CGCGACc -3'
miRNA:   3'- gGCUGUUucCCGU-------CAGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 18191 0.67 0.711011
Target:  5'- aUCGGCugcGAGGuGCGccUCGGCgACGCGACg -3'
miRNA:   3'- -GGCUGu--UUCC-CGUc-AGCUG-UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 13655 0.67 0.711011
Target:  5'- gCGGCGgcucggucgccGAGGGCGccGUCGACGCuauguCGGCg -3'
miRNA:   3'- gGCUGU-----------UUCCCGU--CAGCUGUGc----GCUG- -5'
12952 5' -54.2 NC_003387.1 + 29607 0.67 0.711011
Target:  5'- gCGACuaugucGGGUaucAGUCGgugcaccgcACGCGCGACg -3'
miRNA:   3'- gGCUGuuu---CCCG---UCAGC---------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15063 0.67 0.711011
Target:  5'- aCCGGau--GGcGUGGUCGugACgGCGACg -3'
miRNA:   3'- -GGCUguuuCC-CGUCAGCugUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 17439 0.67 0.721715
Target:  5'- gCGGCGAacgauAGGcGcCAGUCGuACcCGCGGCg -3'
miRNA:   3'- gGCUGUU-----UCC-C-GUCAGC-UGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 11576 0.67 0.721715
Target:  5'- cCUGACAcucgcAGcGGCcGUCGGCGCGCuGCc -3'
miRNA:   3'- -GGCUGUu----UC-CCGuCAGCUGUGCGcUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.