miRNA display CGI


Results 81 - 100 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 15558 0.67 0.721715
Target:  5'- cCCGcCGGAGGuGCAGcCGAUuCGCGcCu -3'
miRNA:   3'- -GGCuGUUUCC-CGUCaGCUGuGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 11576 0.67 0.721715
Target:  5'- cCUGACAcucgcAGcGGCcGUCGGCGCGCuGCc -3'
miRNA:   3'- -GGCUGUu----UC-CCGuCAGCUGUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 41712 0.67 0.721715
Target:  5'- gCCGACGAA-GGCGGcCGGgGCaCGGCc -3'
miRNA:   3'- -GGCUGUUUcCCGUCaGCUgUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 17439 0.67 0.721715
Target:  5'- gCGGCGAacgauAGGcGcCAGUCGuACcCGCGGCg -3'
miRNA:   3'- gGCUGUU-----UCC-C-GUCAGC-UGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 26157 0.67 0.732331
Target:  5'- cCCGGCAccgcccgcAAGGGCGucauGUCGuCGCGUG-Cu -3'
miRNA:   3'- -GGCUGU--------UUCCCGU----CAGCuGUGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 34683 0.67 0.732331
Target:  5'- cCCGACGAAaaacacgccguGGGCcuGGU--ACAUGCGGCg -3'
miRNA:   3'- -GGCUGUUU-----------CCCG--UCAgcUGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 34110 0.67 0.732331
Target:  5'- gCGGCAGaucGGcGGC-GUCGACGuCGCGGu -3'
miRNA:   3'- gGCUGUU---UC-CCGuCAGCUGU-GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 16755 0.67 0.742845
Target:  5'- gCCG-CcGAGGGCcuccUCGAC-CGCGGCc -3'
miRNA:   3'- -GGCuGuUUCCCGuc--AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 51199 0.67 0.742845
Target:  5'- cUCGGCAccGAGGugcugagccuGCAcGUCGGC-CGCGGCc -3'
miRNA:   3'- -GGCUGU--UUCC----------CGU-CAGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 13569 0.67 0.742845
Target:  5'- cCCGAuCGAcGGGCAggacGUCGGCugGUcGCc -3'
miRNA:   3'- -GGCU-GUUuCCCGU----CAGCUGugCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 11038 0.67 0.742845
Target:  5'- gCGACGccGGGUcgGGUUGACGC-CGAa -3'
miRNA:   3'- gGCUGUuuCCCG--UCAGCUGUGcGCUg -5'
12952 5' -54.2 NC_003387.1 + 9413 0.66 0.753248
Target:  5'- gCCGAgGAGuGGGCcgacgAGUaCGACGCG-GGCg -3'
miRNA:   3'- -GGCUgUUU-CCCG-----UCA-GCUGUGCgCUG- -5'
12952 5' -54.2 NC_003387.1 + 42035 0.66 0.763527
Target:  5'- gCCGAgCGccAGGGCgccaAGaUCGAC-CGCGGCg -3'
miRNA:   3'- -GGCU-GUu-UCCCG----UC-AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 27924 0.66 0.772663
Target:  5'- gCGGCGugggcgccucgggGGGGGCucGGUCGGgGCGCucGGCg -3'
miRNA:   3'- gGCUGU-------------UUCCCG--UCAGCUgUGCG--CUG- -5'
12952 5' -54.2 NC_003387.1 + 1476 0.66 0.772663
Target:  5'- gUCGAgGGccAGGGC-GUCGACGucgagcaccaggcCGCGGCc -3'
miRNA:   3'- -GGCUgUU--UCCCGuCAGCUGU-------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 12821 0.66 0.773671
Target:  5'- aCGuCGAAGGGCGGcaagcCGAaGgGCGGCg -3'
miRNA:   3'- gGCuGUUUCCCGUCa----GCUgUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 33865 0.66 0.773671
Target:  5'- uUGACGAGGuGGC-GUCGugAUGC-ACa -3'
miRNA:   3'- gGCUGUUUC-CCGuCAGCugUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 25793 0.66 0.780685
Target:  5'- gCCGAC--AGGGcCAGccCGGCgaacaggaacagcaGCGCGGCg -3'
miRNA:   3'- -GGCUGuuUCCC-GUCa-GCUG--------------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 9117 0.66 0.790573
Target:  5'- gCCGACAuucaaggugcucAAGGGCAcugacggcaaccacGUCGuGCAguacaGCGACg -3'
miRNA:   3'- -GGCUGU------------UUCCCGU--------------CAGC-UGUg----CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 35692 0.66 0.793508
Target:  5'- cCCGGCGAGGgcGGCAGcCG-C-CGCGGu -3'
miRNA:   3'- -GGCUGUUUC--CCGUCaGCuGuGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.