miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 51199 0.67 0.742845
Target:  5'- cUCGGCAccGAGGugcugagccuGCAcGUCGGC-CGCGGCc -3'
miRNA:   3'- -GGCUGU--UUCC----------CGU-CAGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 16755 0.67 0.742845
Target:  5'- gCCG-CcGAGGGCcuccUCGAC-CGCGGCc -3'
miRNA:   3'- -GGCuGuUUCCCGuc--AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 13569 0.67 0.742845
Target:  5'- cCCGAuCGAcGGGCAggacGUCGGCugGUcGCc -3'
miRNA:   3'- -GGCU-GUUuCCCGU----CAGCUGugCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 34110 0.67 0.732331
Target:  5'- gCGGCAGaucGGcGGC-GUCGACGuCGCGGu -3'
miRNA:   3'- gGCUGUU---UC-CCGuCAGCUGU-GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 34683 0.67 0.732331
Target:  5'- cCCGACGAAaaacacgccguGGGCcuGGU--ACAUGCGGCg -3'
miRNA:   3'- -GGCUGUUU-----------CCCG--UCAgcUGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 26157 0.67 0.732331
Target:  5'- cCCGGCAccgcccgcAAGGGCGucauGUCGuCGCGUG-Cu -3'
miRNA:   3'- -GGCUGU--------UUCCCGU----CAGCuGUGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 11576 0.67 0.721715
Target:  5'- cCUGACAcucgcAGcGGCcGUCGGCGCGCuGCc -3'
miRNA:   3'- -GGCUGUu----UC-CCGuCAGCUGUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 39312 0.67 0.721715
Target:  5'- gCCGACAacggcGAGGGCGugcugUGAuCAcCGCGGCg -3'
miRNA:   3'- -GGCUGU-----UUCCCGUca---GCU-GU-GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 41712 0.67 0.721715
Target:  5'- gCCGACGAA-GGCGGcCGGgGCaCGGCc -3'
miRNA:   3'- -GGCUGUUUcCCGUCaGCUgUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15558 0.67 0.721715
Target:  5'- cCCGcCGGAGGuGCAGcCGAUuCGCGcCu -3'
miRNA:   3'- -GGCuGUUUCC-CGUCaGCUGuGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 3304 0.67 0.721715
Target:  5'- gCCGACuc-GGGCgccgaGGUgcUGugGCGUGACa -3'
miRNA:   3'- -GGCUGuuuCCCG-----UCA--GCugUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 17439 0.67 0.721715
Target:  5'- gCGGCGAacgauAGGcGcCAGUCGuACcCGCGGCg -3'
miRNA:   3'- gGCUGUU-----UCC-C-GUCAGC-UGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 13655 0.67 0.711011
Target:  5'- gCGGCGgcucggucgccGAGGGCGccGUCGACGCuauguCGGCg -3'
miRNA:   3'- gGCUGU-----------UUCCCGU--CAGCUGUGc----GCUG- -5'
12952 5' -54.2 NC_003387.1 + 15063 0.67 0.711011
Target:  5'- aCCGGau--GGcGUGGUCGugACgGCGACg -3'
miRNA:   3'- -GGCUguuuCC-CGUCAGCugUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 29607 0.67 0.711011
Target:  5'- gCGACuaugucGGGUaucAGUCGgugcaccgcACGCGCGACg -3'
miRNA:   3'- gGCUGuuu---CCCG---UCAGC---------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 18191 0.67 0.711011
Target:  5'- aUCGGCugcGAGGuGCGccUCGGCgACGCGACg -3'
miRNA:   3'- -GGCUGu--UUCC-CGUc-AGCUG-UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 18722 0.67 0.709936
Target:  5'- aUGACAGcaGGCAgcucgucGUCGAC-CGCGACc -3'
miRNA:   3'- gGCUGUUucCCGU-------CAGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 34943 0.67 0.709936
Target:  5'- uCCGACAuGGGGaucguuuCGGcCGACGcCGUGAUg -3'
miRNA:   3'- -GGCUGUuUCCC-------GUCaGCUGU-GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 8797 0.67 0.707783
Target:  5'- gCCGAuCGAgguuuGGGGUGG-CGACgaaaucggugcgcuGCGCGACa -3'
miRNA:   3'- -GGCU-GUU-----UCCCGUCaGCUG--------------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 48259 0.67 0.700228
Target:  5'- gCGGCGGGcucGGCGGUCGGCucggccuucgGCGCGGg -3'
miRNA:   3'- gGCUGUUUc--CCGUCAGCUG----------UGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.