miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 41306 0.67 0.700228
Target:  5'- aCCGACGAcagcaccucGGGGCcGaucgCGGCcaGCGUGGCg -3'
miRNA:   3'- -GGCUGUU---------UCCCGuCa---GCUG--UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 48259 0.67 0.700228
Target:  5'- gCGGCGGGcucGGCGGUCGGCucggccuucgGCGCGGg -3'
miRNA:   3'- gGCUGUUUc--CCGUCAGCUG----------UGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 20016 0.67 0.700228
Target:  5'- gCCGugAAGcccugugucauGuGGguGUCGACgacguGCGCGGCg -3'
miRNA:   3'- -GGCugUUU-----------C-CCguCAGCUG-----UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 41081 0.68 0.689379
Target:  5'- gCGAuCGAGGGGCGaUCGugAgcCGCGAg -3'
miRNA:   3'- gGCU-GUUUCCCGUcAGCugU--GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 6814 0.68 0.688291
Target:  5'- gCCGACGuacugcagaucGGGcGGCAGgucgaucgcccgcUCGGC-CGCGGCg -3'
miRNA:   3'- -GGCUGU-----------UUC-CCGUC-------------AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 40123 0.68 0.688291
Target:  5'- cCCGGCGucGGGCaAGUucaaggcccacggCGACACcgucgGCGGCc -3'
miRNA:   3'- -GGCUGUuuCCCG-UCA-------------GCUGUG-----CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 39228 0.68 0.681752
Target:  5'- aCCGGCGAacccgccGGGGCuGUCGGuggugcccuccucgcCGuCGCGGCc -3'
miRNA:   3'- -GGCUGUU-------UCCCGuCAGCU---------------GU-GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 14182 0.68 0.678475
Target:  5'- gCgGGCGuGAGGGC-GUCGugaugGCGCGCGAg -3'
miRNA:   3'- -GgCUGU-UUCCCGuCAGC-----UGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 41870 0.68 0.678475
Target:  5'- aUCGGCAGAccGCGGUCGgcgaGCugGCGAa -3'
miRNA:   3'- -GGCUGUUUccCGUCAGC----UGugCGCUg -5'
12952 5' -54.2 NC_003387.1 + 33675 0.68 0.678475
Target:  5'- gCGACAccGGGaugaUCGGCAgGCGGCc -3'
miRNA:   3'- gGCUGUuuCCCguc-AGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 29067 0.68 0.678475
Target:  5'- uUCGGCGuuucuAGGGCcuGUUGACGCGCc-- -3'
miRNA:   3'- -GGCUGUu----UCCCGu-CAGCUGUGCGcug -5'
12952 5' -54.2 NC_003387.1 + 51160 0.68 0.678475
Target:  5'- aCGACGGGGGGCGccgguaugcacGUaCGcCugGCGAUc -3'
miRNA:   3'- gGCUGUUUCCCGU-----------CA-GCuGugCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 14095 0.68 0.667527
Target:  5'- aCGGCGAGuaccuGCGGUCGACG-GCGACc -3'
miRNA:   3'- gGCUGUUUcc---CGUCAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 40810 0.68 0.656546
Target:  5'- gCCGAuuucaaggcCAAAGGGCAcaagacggcGcCGAUcguGCGCGACg -3'
miRNA:   3'- -GGCU---------GUUUCCCGU---------CaGCUG---UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 5438 0.68 0.656546
Target:  5'- cUCGACcGAGGGC-GcCGACG-GCGGCc -3'
miRNA:   3'- -GGCUGuUUCCCGuCaGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 32746 0.68 0.645542
Target:  5'- aCGGCcccGAGGGCagcguugugaAGUCGACGCGguaccucuugccCGACg -3'
miRNA:   3'- gGCUGu--UUCCCG----------UCAGCUGUGC------------GCUG- -5'
12952 5' -54.2 NC_003387.1 + 24137 0.68 0.645542
Target:  5'- gCGGCGguguugagcuuGAGGGCGucGUCGACG-GCGAUc -3'
miRNA:   3'- gGCUGU-----------UUCCCGU--CAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 19139 0.68 0.644441
Target:  5'- cCCGACc--GGGCGguggcucGUCGACgcugucgaggGCGCGGCc -3'
miRNA:   3'- -GGCUGuuuCCCGU-------CAGCUG----------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 5020 0.68 0.644441
Target:  5'- aCGGCAggcucacGAGGGCGG-CGcUGCGCGAg -3'
miRNA:   3'- gGCUGU-------UUCCCGUCaGCuGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 33471 0.69 0.634526
Target:  5'- gCCGAaguCGccGaGGCGGUCGGCGCccGCGAUc -3'
miRNA:   3'- -GGCU---GUuuC-CCGUCAGCUGUG--CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.