miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 22036 0.69 0.634526
Target:  5'- gUCGACAuuccguGGGCGGUggcggcgaucacCGGCACcguugGCGACg -3'
miRNA:   3'- -GGCUGUuu----CCCGUCA------------GCUGUG-----CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 36150 0.69 0.612497
Target:  5'- cCCGACGA--GGCGGUCGGC-CG-GAUg -3'
miRNA:   3'- -GGCUGUUucCCGUCAGCUGuGCgCUG- -5'
12952 5' -54.2 NC_003387.1 + 35990 0.69 0.612497
Target:  5'- gCGACGacGAGGGCAcGaUCGACG-GCGAg -3'
miRNA:   3'- gGCUGU--UUCCCGU-C-AGCUGUgCGCUg -5'
12952 5' -54.2 NC_003387.1 + 33695 0.69 0.612497
Target:  5'- cUCGGCGAccGGCGGUgUGACGCaGUGGCu -3'
miRNA:   3'- -GGCUGUUucCCGUCA-GCUGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 25898 0.69 0.612497
Target:  5'- cCCGGCGuccAGGGCGGcgcgcucacCGACcaccaGCGCGGCc -3'
miRNA:   3'- -GGCUGUu--UCCCGUCa--------GCUG-----UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 3438 0.69 0.612497
Target:  5'- cUCGGCGAGcaccuGGGCgaccuucacgcGGUCGAUGCGCGuCa -3'
miRNA:   3'- -GGCUGUUU-----CCCG-----------UCAGCUGUGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 22316 0.69 0.609196
Target:  5'- cCCGACAGcucGGGCagccacacgaucauGGUCGugAUGCGcaGCg -3'
miRNA:   3'- -GGCUGUUu--CCCG--------------UCAGCugUGCGC--UG- -5'
12952 5' -54.2 NC_003387.1 + 4149 0.69 0.601503
Target:  5'- gUCGGCGAGgcGGGC-GUCGaugcacgccugGCACGUGACc -3'
miRNA:   3'- -GGCUGUUU--CCCGuCAGC-----------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 25278 0.69 0.601503
Target:  5'- gUCGcACAucGGGCAGUCaGCcaGgGCGACg -3'
miRNA:   3'- -GGC-UGUuuCCCGUCAGcUG--UgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 29250 0.69 0.590536
Target:  5'- gCCGACAAGGucgaGCAGUaCGAgGCGaUGGCa -3'
miRNA:   3'- -GGCUGUUUCc---CGUCA-GCUgUGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 15614 0.69 0.590536
Target:  5'- gCCGACGucgagcacgucGAGGGCgcgcacggcgaGGUCGAcCAUGuCGGCg -3'
miRNA:   3'- -GGCUGU-----------UUCCCG-----------UCAGCU-GUGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 3823 0.69 0.579604
Target:  5'- gCGACAAcgaucgucAGGGCGGcgCGGUAgGCGGCg -3'
miRNA:   3'- gGCUGUU--------UCCCGUCa-GCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 50987 0.69 0.579604
Target:  5'- gCGGCcGGGGGCGuuuUCGuuugcuguGCACGCGGCa -3'
miRNA:   3'- gGCUGuUUCCCGUc--AGC--------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15412 0.69 0.579604
Target:  5'- aCGGCAcgucGGcGCGGUCGACgaccGCGcCGACg -3'
miRNA:   3'- gGCUGUuu--CC-CGUCAGCUG----UGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 6078 0.7 0.568715
Target:  5'- aUGACGAccgccGGGGCGucGUCGGCAggcucgaacaccUGCGACa -3'
miRNA:   3'- gGCUGUU-----UCCCGU--CAGCUGU------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 11253 0.7 0.567629
Target:  5'- gCGACAuuggggcGGGGGCAGUCa--GgGCGGCg -3'
miRNA:   3'- gGCUGU-------UUCCCGUCAGcugUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 22537 0.7 0.557878
Target:  5'- cCCaGGCcGAGGGCuGGcUCGACGCgGUGGCg -3'
miRNA:   3'- -GG-CUGuUUCCCG-UC-AGCUGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 2522 0.7 0.540665
Target:  5'- aCUGAUGAGGGGCcgguguuccgcacgcGGUCG-C-CGCGGCa -3'
miRNA:   3'- -GGCUGUUUCCCG---------------UCAGCuGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 12741 0.7 0.526813
Target:  5'- aCCG-CAAcaccucGGGGCAGUCGAaccucauggaggacCGCGGCa -3'
miRNA:   3'- -GGCuGUU------UCCCGUCAGCUgu------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 3514 0.7 0.525753
Target:  5'- aCCGGCAGAuccguugcGGGCucagcaacGUCGACggccgccgccuGCGCGACc -3'
miRNA:   3'- -GGCUGUUU--------CCCGu-------CAGCUG-----------UGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.