miRNA display CGI


Results 81 - 100 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 49062 0.71 0.515197
Target:  5'- gCUGGCGcucaccGGGCAGgcucgCGGCGCGCaGGCg -3'
miRNA:   3'- -GGCUGUuu----CCCGUCa----GCUGUGCG-CUG- -5'
12952 5' -54.2 NC_003387.1 + 25555 0.71 0.504728
Target:  5'- aCGcCGAGGGGCAGcagcuucgCGACGCGCu-- -3'
miRNA:   3'- gGCuGUUUCCCGUCa-------GCUGUGCGcug -5'
12952 5' -54.2 NC_003387.1 + 20171 0.71 0.504728
Target:  5'- gCGuCGAGGGcGCGGUUGAUGCGCuGCu -3'
miRNA:   3'- gGCuGUUUCC-CGUCAGCUGUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 1686 0.71 0.504728
Target:  5'- aCCGACAccgcGGcGGCGGUCGACugGaucGCu -3'
miRNA:   3'- -GGCUGUu---UC-CCGUCAGCUGugCgc-UG- -5'
12952 5' -54.2 NC_003387.1 + 17108 0.71 0.494351
Target:  5'- aCGACGAGcuGGCGGgggCGACGCuCGACg -3'
miRNA:   3'- gGCUGUUUc-CCGUCa--GCUGUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 35886 0.71 0.494351
Target:  5'- gCGuCAAGGGGCAcGUCGACcUGCuGCg -3'
miRNA:   3'- gGCuGUUUCCCGU-CAGCUGuGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 21227 0.71 0.494351
Target:  5'- gCgGGCGcAGGGCgauccGGUCGGCAuggugcgcCGCGACg -3'
miRNA:   3'- -GgCUGUuUCCCG-----UCAGCUGU--------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 51997 0.71 0.484073
Target:  5'- aCCGACGGccaGGCcGUCGACACgaugccuuGCGGCg -3'
miRNA:   3'- -GGCUGUUuc-CCGuCAGCUGUG--------CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 618 0.71 0.473899
Target:  5'- gCCGAgCAgggcGAGGGCAgcGUCGcCGCcGCGGCa -3'
miRNA:   3'- -GGCU-GU----UUCCCGU--CAGCuGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 22660 0.71 0.470867
Target:  5'- cCCGGCGGccgucAGGGCGcgcucgugggcgguGUCGACG-GCGGCg -3'
miRNA:   3'- -GGCUGUU-----UCCCGU--------------CAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 729 0.72 0.45388
Target:  5'- gUCGACGGccuGGCcGUCGguGCGCGCGACg -3'
miRNA:   3'- -GGCUGUUuc-CCGuCAGC--UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 13298 0.72 0.45388
Target:  5'- aCGGC-AAGGGCGGcggccUCGACGgcaGCGACc -3'
miRNA:   3'- gGCUGuUUCCCGUC-----AGCUGUg--CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 33753 0.72 0.434328
Target:  5'- cCCGGCA-AGGGCAacggCGGCGcCGCGAg -3'
miRNA:   3'- -GGCUGUuUCCCGUca--GCUGU-GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 21938 0.72 0.434328
Target:  5'- cUCGGCGgcGGGGGCGG-CGGCAggcgucUGCGGCg -3'
miRNA:   3'- -GGCUGU--UUCCCGUCaGCUGU------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 8199 0.72 0.424738
Target:  5'- gCGGCGccGGGCGGccCGGCACGaacaGACg -3'
miRNA:   3'- gGCUGUuuCCCGUCa-GCUGUGCg---CUG- -5'
12952 5' -54.2 NC_003387.1 + 44376 0.72 0.414335
Target:  5'- aCCGACGAcccGGUGGUCGACGaggcgaagcucgcCGCGGCu -3'
miRNA:   3'- -GGCUGUUuc-CCGUCAGCUGU-------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 725 0.73 0.409659
Target:  5'- gCCGACAGgucGGGcaggugcgccaggauGCGGUCGGCcacCGCGGCa -3'
miRNA:   3'- -GGCUGUU---UCC---------------CGUCAGCUGu--GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 43465 0.73 0.396742
Target:  5'- aCCGGCGGcgacguccugucGGGGCGGUU--CAUGCGGCa -3'
miRNA:   3'- -GGCUGUU------------UCCCGUCAGcuGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 39154 0.73 0.395829
Target:  5'- uCCGcGCcGAGGGCguguacuGGUCGGUGCGCGACa -3'
miRNA:   3'- -GGC-UGuUUCCCG-------UCAGCUGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 44717 0.74 0.352808
Target:  5'- gCCGACAGAGGGCacgagAGUC-ACuguUGCGGCc -3'
miRNA:   3'- -GGCUGUUUCCCG-----UCAGcUGu--GCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.