Results 101 - 110 of 110 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 12952 | 5' | -54.2 | NC_003387.1 | + | 19623 | 0.74 | 0.336225 |
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Target: 5'- gCCG-CGAAGGGCg--CGACGgGCGGCu -3' miRNA: 3'- -GGCuGUUUCCCGucaGCUGUgCGCUG- -5' |
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| 12952 | 5' | -54.2 | NC_003387.1 | + | 15298 | 0.74 | 0.336225 |
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Target: 5'- gCGGCuuGGGGCucuuGGUCGcCAuCGCGACg -3' miRNA: 3'- gGCUGuuUCCCG----UCAGCuGU-GCGCUG- -5' |
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| 12952 | 5' | -54.2 | NC_003387.1 | + | 1570 | 0.74 | 0.335411 |
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Target: 5'- aCGGCGAAGcgccuaacgcccuGGCGGUCGACAUGUcGCa -3' miRNA: 3'- gGCUGUUUC-------------CCGUCAGCUGUGCGcUG- -5' |
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| 12952 | 5' | -54.2 | NC_003387.1 | + | 5139 | 0.74 | 0.328149 |
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Target: 5'- gCGACGAGGGGCGcUCGGCGC-CGGu -3' miRNA: 3'- gGCUGUUUCCCGUcAGCUGUGcGCUg -5' |
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| 12952 | 5' | -54.2 | NC_003387.1 | + | 19859 | 0.75 | 0.29729 |
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Target: 5'- gCUGGCAGucGGcGCAGUCGGCgACGCGGa -3' miRNA: 3'- -GGCUGUUu-CC-CGUCAGCUG-UGCGCUg -5' |
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| 12952 | 5' | -54.2 | NC_003387.1 | + | 28004 | 0.76 | 0.275657 |
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Target: 5'- cCCGAUcGAGGGCAc-CGACgaGCGCGGCa -3' miRNA: 3'- -GGCUGuUUCCCGUcaGCUG--UGCGCUG- -5' |
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| 12952 | 5' | -54.2 | NC_003387.1 | + | 13522 | 0.76 | 0.268731 |
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Target: 5'- cCCGACcgcGGGGGCcuGGUCGagcuGCACGCGAa -3' miRNA: 3'- -GGCUGu--UUCCCG--UCAGC----UGUGCGCUg -5' |
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| 12952 | 5' | -54.2 | NC_003387.1 | + | 8142 | 0.78 | 0.196258 |
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Target: 5'- cCCGGCc--GGGCAG-CGAC-CGCGACg -3' miRNA: 3'- -GGCUGuuuCCCGUCaGCUGuGCGCUG- -5' |
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| 12952 | 5' | -54.2 | NC_003387.1 | + | 35154 | 0.79 | 0.176184 |
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Target: 5'- aCGACAccagcGAGGGCGGgcuGACGCGCGAa -3' miRNA: 3'- gGCUGU-----UUCCCGUCag-CUGUGCGCUg -5' |
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| 12952 | 5' | -54.2 | NC_003387.1 | + | 33949 | 1.12 | 0.000807 |
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Target: 5'- cCCGACAAAGGGCAGUCGACACGCGACg -3' miRNA: 3'- -GGCUGUUUCCCGUCAGCUGUGCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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