miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 618 0.71 0.473899
Target:  5'- gCCGAgCAgggcGAGGGCAgcGUCGcCGCcGCGGCa -3'
miRNA:   3'- -GGCU-GU----UUCCCGU--CAGCuGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 725 0.73 0.409659
Target:  5'- gCCGACAGgucGGGcaggugcgccaggauGCGGUCGGCcacCGCGGCa -3'
miRNA:   3'- -GGCUGUU---UCC---------------CGUCAGCUGu--GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 729 0.72 0.45388
Target:  5'- gUCGACGGccuGGCcGUCGguGCGCGCGACg -3'
miRNA:   3'- -GGCUGUUuc-CCGuCAGC--UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 1324 0.66 0.793508
Target:  5'- aCGACGucGGGUAcGUCGAgauuucCGC-CGACg -3'
miRNA:   3'- gGCUGUuuCCCGU-CAGCU------GUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 1476 0.66 0.772663
Target:  5'- gUCGAgGGccAGGGC-GUCGACGucgagcaccaggcCGCGGCc -3'
miRNA:   3'- -GGCUgUU--UCCCGuCAGCUGU-------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 1570 0.74 0.335411
Target:  5'- aCGGCGAAGcgccuaacgcccuGGCGGUCGACAUGUcGCa -3'
miRNA:   3'- gGCUGUUUC-------------CCGUCAGCUGUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 1686 0.71 0.504728
Target:  5'- aCCGACAccgcGGcGGCGGUCGACugGaucGCu -3'
miRNA:   3'- -GGCUGUu---UC-CCGUCAGCUGugCgc-UG- -5'
12952 5' -54.2 NC_003387.1 + 2253 0.66 0.803179
Target:  5'- gCCGACGAccucgcGGGCcggGGUCGGCu--CGACg -3'
miRNA:   3'- -GGCUGUUu-----CCCG---UCAGCUGugcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 2522 0.7 0.540665
Target:  5'- aCUGAUGAGGGGCcgguguuccgcacgcGGUCG-C-CGCGGCa -3'
miRNA:   3'- -GGCUGUUUCCCG---------------UCAGCuGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 3304 0.67 0.721715
Target:  5'- gCCGACuc-GGGCgccgaGGUgcUGugGCGUGACa -3'
miRNA:   3'- -GGCUGuuuCCCG-----UCA--GCugUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 3438 0.69 0.612497
Target:  5'- cUCGGCGAGcaccuGGGCgaccuucacgcGGUCGAUGCGCGuCa -3'
miRNA:   3'- -GGCUGUUU-----CCCG-----------UCAGCUGUGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 3514 0.7 0.525753
Target:  5'- aCCGGCAGAuccguugcGGGCucagcaacGUCGACggccgccgccuGCGCGACc -3'
miRNA:   3'- -GGCUGUUU--------CCCGu-------CAGCUG-----------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 3823 0.69 0.579604
Target:  5'- gCGACAAcgaucgucAGGGCGGcgCGGUAgGCGGCg -3'
miRNA:   3'- gGCUGUU--------UCCCGUCa-GCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 4149 0.69 0.601503
Target:  5'- gUCGGCGAGgcGGGC-GUCGaugcacgccugGCACGUGACc -3'
miRNA:   3'- -GGCUGUUU--CCCGuCAGC-----------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 5020 0.68 0.644441
Target:  5'- aCGGCAggcucacGAGGGCGG-CGcUGCGCGAg -3'
miRNA:   3'- gGCUGU-------UUCCCGUCaGCuGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 5139 0.74 0.328149
Target:  5'- gCGACGAGGGGCGcUCGGCGC-CGGu -3'
miRNA:   3'- gGCUGUUUCCCGUcAGCUGUGcGCUg -5'
12952 5' -54.2 NC_003387.1 + 5438 0.68 0.656546
Target:  5'- cUCGACcGAGGGC-GcCGACG-GCGGCc -3'
miRNA:   3'- -GGCUGuUUCCCGuCaGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 6078 0.7 0.568715
Target:  5'- aUGACGAccgccGGGGCGucGUCGGCAggcucgaacaccUGCGACa -3'
miRNA:   3'- gGCUGUU-----UCCCGU--CAGCUGU------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 6814 0.68 0.688291
Target:  5'- gCCGACGuacugcagaucGGGcGGCAGgucgaucgcccgcUCGGC-CGCGGCg -3'
miRNA:   3'- -GGCUGU-----------UUC-CCGUC-------------AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 7651 0.66 0.803179
Target:  5'- aCCGGCccAGGaCGGcccUCGACGCGCucGGCg -3'
miRNA:   3'- -GGCUGuuUCCcGUC---AGCUGUGCG--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.