miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 8142 0.78 0.196258
Target:  5'- cCCGGCc--GGGCAG-CGAC-CGCGACg -3'
miRNA:   3'- -GGCUGuuuCCCGUCaGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 8199 0.72 0.424738
Target:  5'- gCGGCGccGGGCGGccCGGCACGaacaGACg -3'
miRNA:   3'- gGCUGUuuCCCGUCa-GCUGUGCg---CUG- -5'
12952 5' -54.2 NC_003387.1 + 8797 0.67 0.707783
Target:  5'- gCCGAuCGAgguuuGGGGUGG-CGACgaaaucggugcgcuGCGCGACa -3'
miRNA:   3'- -GGCU-GUU-----UCCCGUCaGCUG--------------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 9117 0.66 0.790573
Target:  5'- gCCGACAuucaaggugcucAAGGGCAcugacggcaaccacGUCGuGCAguacaGCGACg -3'
miRNA:   3'- -GGCUGU------------UUCCCGU--------------CAGC-UGUg----CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 9413 0.66 0.753248
Target:  5'- gCCGAgGAGuGGGCcgacgAGUaCGACGCG-GGCg -3'
miRNA:   3'- -GGCUgUUU-CCCG-----UCA-GCUGUGCgCUG- -5'
12952 5' -54.2 NC_003387.1 + 11038 0.67 0.742845
Target:  5'- gCGACGccGGGUcgGGUUGACGC-CGAa -3'
miRNA:   3'- gGCUGUuuCCCG--UCAGCUGUGcGCUg -5'
12952 5' -54.2 NC_003387.1 + 11253 0.7 0.567629
Target:  5'- gCGACAuuggggcGGGGGCAGUCa--GgGCGGCg -3'
miRNA:   3'- gGCUGU-------UUCCCGUCAGcugUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 11576 0.67 0.721715
Target:  5'- cCUGACAcucgcAGcGGCcGUCGGCGCGCuGCc -3'
miRNA:   3'- -GGCUGUu----UC-CCGuCAGCUGUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 12741 0.7 0.526813
Target:  5'- aCCG-CAAcaccucGGGGCAGUCGAaccucauggaggacCGCGGCa -3'
miRNA:   3'- -GGCuGUU------UCCCGUCAGCUgu------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 12821 0.66 0.773671
Target:  5'- aCGuCGAAGGGCGGcaagcCGAaGgGCGGCg -3'
miRNA:   3'- gGCuGUUUCCCGUCa----GCUgUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 13298 0.72 0.45388
Target:  5'- aCGGC-AAGGGCGGcggccUCGACGgcaGCGACc -3'
miRNA:   3'- gGCUGuUUCCCGUC-----AGCUGUg--CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 13522 0.76 0.268731
Target:  5'- cCCGACcgcGGGGGCcuGGUCGagcuGCACGCGAa -3'
miRNA:   3'- -GGCUGu--UUCCCG--UCAGC----UGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 13569 0.67 0.742845
Target:  5'- cCCGAuCGAcGGGCAggacGUCGGCugGUcGCc -3'
miRNA:   3'- -GGCU-GUUuCCCGU----CAGCUGugCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 13655 0.67 0.711011
Target:  5'- gCGGCGgcucggucgccGAGGGCGccGUCGACGCuauguCGGCg -3'
miRNA:   3'- gGCUGU-----------UUCCCGU--CAGCUGUGc----GCUG- -5'
12952 5' -54.2 NC_003387.1 + 14095 0.68 0.667527
Target:  5'- aCGGCGAGuaccuGCGGUCGACG-GCGACc -3'
miRNA:   3'- gGCUGUUUcc---CGUCAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 14182 0.68 0.678475
Target:  5'- gCgGGCGuGAGGGC-GUCGugaugGCGCGCGAg -3'
miRNA:   3'- -GgCUGU-UUCCCGuCAGC-----UGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 15063 0.67 0.711011
Target:  5'- aCCGGau--GGcGUGGUCGugACgGCGACg -3'
miRNA:   3'- -GGCUguuuCC-CGUCAGCugUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15298 0.74 0.336225
Target:  5'- gCGGCuuGGGGCucuuGGUCGcCAuCGCGACg -3'
miRNA:   3'- gGCUGuuUCCCG----UCAGCuGU-GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15345 0.66 0.793508
Target:  5'- aCCGACAGcGGGGC-GcCGcCGCcCGACa -3'
miRNA:   3'- -GGCUGUU-UCCCGuCaGCuGUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15412 0.69 0.579604
Target:  5'- aCGGCAcgucGGcGCGGUCGACgaccGCGcCGACg -3'
miRNA:   3'- gGCUGUuu--CC-CGUCAGCUG----UGC-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.