miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 15558 0.67 0.721715
Target:  5'- cCCGcCGGAGGuGCAGcCGAUuCGCGcCu -3'
miRNA:   3'- -GGCuGUUUCC-CGUCaGCUGuGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 15614 0.69 0.590536
Target:  5'- gCCGACGucgagcacgucGAGGGCgcgcacggcgaGGUCGAcCAUGuCGGCg -3'
miRNA:   3'- -GGCUGU-----------UUCCCG-----------UCAGCU-GUGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 16755 0.67 0.742845
Target:  5'- gCCG-CcGAGGGCcuccUCGAC-CGCGGCc -3'
miRNA:   3'- -GGCuGuUUCCCGuc--AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 17108 0.71 0.494351
Target:  5'- aCGACGAGcuGGCGGgggCGACGCuCGACg -3'
miRNA:   3'- gGCUGUUUc-CCGUCa--GCUGUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 17180 0.67 0.700228
Target:  5'- gCCGcCu--GGGCGG-CGACGgCGCGAa -3'
miRNA:   3'- -GGCuGuuuCCCGUCaGCUGU-GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 17439 0.67 0.721715
Target:  5'- gCGGCGAacgauAGGcGcCAGUCGuACcCGCGGCg -3'
miRNA:   3'- gGCUGUU-----UCC-C-GUCAGC-UGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 18191 0.67 0.711011
Target:  5'- aUCGGCugcGAGGuGCGccUCGGCgACGCGACg -3'
miRNA:   3'- -GGCUGu--UUCC-CGUc-AGCUG-UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 18722 0.67 0.709936
Target:  5'- aUGACAGcaGGCAgcucgucGUCGAC-CGCGACc -3'
miRNA:   3'- gGCUGUUucCCGU-------CAGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 19139 0.68 0.644441
Target:  5'- cCCGACc--GGGCGguggcucGUCGACgcugucgaggGCGCGGCc -3'
miRNA:   3'- -GGCUGuuuCCCGU-------CAGCUG----------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 19623 0.74 0.336225
Target:  5'- gCCG-CGAAGGGCg--CGACGgGCGGCu -3'
miRNA:   3'- -GGCuGUUUCCCGucaGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 19859 0.75 0.29729
Target:  5'- gCUGGCAGucGGcGCAGUCGGCgACGCGGa -3'
miRNA:   3'- -GGCUGUUu-CC-CGUCAGCUG-UGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 20016 0.67 0.700228
Target:  5'- gCCGugAAGcccugugucauGuGGguGUCGACgacguGCGCGGCg -3'
miRNA:   3'- -GGCugUUU-----------C-CCguCAGCUG-----UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 20171 0.71 0.504728
Target:  5'- gCGuCGAGGGcGCGGUUGAUGCGCuGCu -3'
miRNA:   3'- gGCuGUUUCC-CGUCAGCUGUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 21227 0.71 0.494351
Target:  5'- gCgGGCGcAGGGCgauccGGUCGGCAuggugcgcCGCGACg -3'
miRNA:   3'- -GgCUGUuUCCCG-----UCAGCUGU--------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 21938 0.72 0.434328
Target:  5'- cUCGGCGgcGGGGGCGG-CGGCAggcgucUGCGGCg -3'
miRNA:   3'- -GGCUGU--UUCCCGUCaGCUGU------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 22036 0.69 0.634526
Target:  5'- gUCGACAuuccguGGGCGGUggcggcgaucacCGGCACcguugGCGACg -3'
miRNA:   3'- -GGCUGUuu----CCCGUCA------------GCUGUG-----CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 22316 0.69 0.609196
Target:  5'- cCCGACAGcucGGGCagccacacgaucauGGUCGugAUGCGcaGCg -3'
miRNA:   3'- -GGCUGUUu--CCCG--------------UCAGCugUGCGC--UG- -5'
12952 5' -54.2 NC_003387.1 + 22537 0.7 0.557878
Target:  5'- cCCaGGCcGAGGGCuGGcUCGACGCgGUGGCg -3'
miRNA:   3'- -GG-CUGuUUCCCG-UC-AGCUGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 22660 0.71 0.470867
Target:  5'- cCCGGCGGccgucAGGGCGcgcucgugggcgguGUCGACG-GCGGCg -3'
miRNA:   3'- -GGCUGUU-----UCCCGU--------------CAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 24137 0.68 0.645542
Target:  5'- gCGGCGguguugagcuuGAGGGCGucGUCGACG-GCGAUc -3'
miRNA:   3'- gGCUGU-----------UUCCCGU--CAGCUGUgCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.