miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 25278 0.69 0.601503
Target:  5'- gUCGcACAucGGGCAGUCaGCcaGgGCGACg -3'
miRNA:   3'- -GGC-UGUuuCCCGUCAGcUG--UgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 25555 0.71 0.504728
Target:  5'- aCGcCGAGGGGCAGcagcuucgCGACGCGCu-- -3'
miRNA:   3'- gGCuGUUUCCCGUCa-------GCUGUGCGcug -5'
12952 5' -54.2 NC_003387.1 + 25793 0.66 0.780685
Target:  5'- gCCGAC--AGGGcCAGccCGGCgaacaggaacagcaGCGCGGCg -3'
miRNA:   3'- -GGCUGuuUCCC-GUCa-GCUG--------------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 25857 0.66 0.793508
Target:  5'- gCGGCAAGGGuggccuGCAGUUGcCGaGCGGCc -3'
miRNA:   3'- gGCUGUUUCC------CGUCAGCuGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 25898 0.69 0.612497
Target:  5'- cCCGGCGuccAGGGCGGcgcgcucacCGACcaccaGCGCGGCc -3'
miRNA:   3'- -GGCUGUu--UCCCGUCa--------GCUG-----UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 26157 0.67 0.732331
Target:  5'- cCCGGCAccgcccgcAAGGGCGucauGUCGuCGCGUG-Cu -3'
miRNA:   3'- -GGCUGU--------UUCCCGU----CAGCuGUGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 27924 0.66 0.772663
Target:  5'- gCGGCGugggcgccucgggGGGGGCucGGUCGGgGCGCucGGCg -3'
miRNA:   3'- gGCUGU-------------UUCCCG--UCAGCUgUGCG--CUG- -5'
12952 5' -54.2 NC_003387.1 + 28004 0.76 0.275657
Target:  5'- cCCGAUcGAGGGCAc-CGACgaGCGCGGCa -3'
miRNA:   3'- -GGCUGuUUCCCGUcaGCUG--UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 29067 0.68 0.678475
Target:  5'- uUCGGCGuuucuAGGGCcuGUUGACGCGCc-- -3'
miRNA:   3'- -GGCUGUu----UCCCGu-CAGCUGUGCGcug -5'
12952 5' -54.2 NC_003387.1 + 29250 0.69 0.590536
Target:  5'- gCCGACAAGGucgaGCAGUaCGAgGCGaUGGCa -3'
miRNA:   3'- -GGCUGUUUCc---CGUCA-GCUgUGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 29607 0.67 0.711011
Target:  5'- gCGACuaugucGGGUaucAGUCGgugcaccgcACGCGCGACg -3'
miRNA:   3'- gGCUGuuu---CCCG---UCAGC---------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 32711 0.66 0.803179
Target:  5'- aUGACAcAGGGCuucaCGGCGCaCGGCg -3'
miRNA:   3'- gGCUGUuUCCCGuca-GCUGUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 32746 0.68 0.645542
Target:  5'- aCGGCcccGAGGGCagcguugugaAGUCGACGCGguaccucuugccCGACg -3'
miRNA:   3'- gGCUGu--UUCCCG----------UCAGCUGUGC------------GCUG- -5'
12952 5' -54.2 NC_003387.1 + 33471 0.69 0.634526
Target:  5'- gCCGAaguCGccGaGGCGGUCGGCGCccGCGAUc -3'
miRNA:   3'- -GGCU---GUuuC-CCGUCAGCUGUG--CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 33675 0.68 0.678475
Target:  5'- gCGACAccGGGaugaUCGGCAgGCGGCc -3'
miRNA:   3'- gGCUGUuuCCCguc-AGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 33695 0.69 0.612497
Target:  5'- cUCGGCGAccGGCGGUgUGACGCaGUGGCu -3'
miRNA:   3'- -GGCUGUUucCCGUCA-GCUGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 33753 0.72 0.434328
Target:  5'- cCCGGCA-AGGGCAacggCGGCGcCGCGAg -3'
miRNA:   3'- -GGCUGUuUCCCGUca--GCUGU-GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 33865 0.66 0.773671
Target:  5'- uUGACGAGGuGGC-GUCGugAUGC-ACa -3'
miRNA:   3'- gGCUGUUUC-CCGuCAGCugUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 33949 1.12 0.000807
Target:  5'- cCCGACAAAGGGCAGUCGACACGCGACg -3'
miRNA:   3'- -GGCUGUUUCCCGUCAGCUGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 34110 0.67 0.732331
Target:  5'- gCGGCAGaucGGcGGC-GUCGACGuCGCGGu -3'
miRNA:   3'- gGCUGUU---UC-CCGuCAGCUGU-GCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.