Results 81 - 100 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12952 | 5' | -54.2 | NC_003387.1 | + | 34683 | 0.67 | 0.732331 |
Target: 5'- cCCGACGAAaaacacgccguGGGCcuGGU--ACAUGCGGCg -3' miRNA: 3'- -GGCUGUUU-----------CCCG--UCAgcUGUGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 34943 | 0.67 | 0.709936 |
Target: 5'- uCCGACAuGGGGaucguuuCGGcCGACGcCGUGAUg -3' miRNA: 3'- -GGCUGUuUCCC-------GUCaGCUGU-GCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 35154 | 0.79 | 0.176184 |
Target: 5'- aCGACAccagcGAGGGCGGgcuGACGCGCGAa -3' miRNA: 3'- gGCUGU-----UUCCCGUCag-CUGUGCGCUg -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 35692 | 0.66 | 0.793508 |
Target: 5'- cCCGGCGAGGgcGGCAGcCG-C-CGCGGu -3' miRNA: 3'- -GGCUGUUUC--CCGUCaGCuGuGCGCUg -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 35886 | 0.71 | 0.494351 |
Target: 5'- gCGuCAAGGGGCAcGUCGACcUGCuGCg -3' miRNA: 3'- gGCuGUUUCCCGU-CAGCUGuGCGcUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 35990 | 0.69 | 0.612497 |
Target: 5'- gCGACGacGAGGGCAcGaUCGACG-GCGAg -3' miRNA: 3'- gGCUGU--UUCCCGU-C-AGCUGUgCGCUg -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 36150 | 0.69 | 0.612497 |
Target: 5'- cCCGACGA--GGCGGUCGGC-CG-GAUg -3' miRNA: 3'- -GGCUGUUucCCGUCAGCUGuGCgCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 36596 | 0.66 | 0.793508 |
Target: 5'- gCGGCAGuaacccGGCGuUCGACuCGCGGCu -3' miRNA: 3'- gGCUGUUuc----CCGUcAGCUGuGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 39154 | 0.73 | 0.395829 |
Target: 5'- uCCGcGCcGAGGGCguguacuGGUCGGUGCGCGACa -3' miRNA: 3'- -GGC-UGuUUCCCG-------UCAGCUGUGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 39228 | 0.68 | 0.681752 |
Target: 5'- aCCGGCGAacccgccGGGGCuGUCGGuggugcccuccucgcCGuCGCGGCc -3' miRNA: 3'- -GGCUGUU-------UCCCGuCAGCU---------------GU-GCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 39312 | 0.67 | 0.721715 |
Target: 5'- gCCGACAacggcGAGGGCGugcugUGAuCAcCGCGGCg -3' miRNA: 3'- -GGCUGU-----UUCCCGUca---GCU-GU-GCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 40123 | 0.68 | 0.688291 |
Target: 5'- cCCGGCGucGGGCaAGUucaaggcccacggCGACACcgucgGCGGCc -3' miRNA: 3'- -GGCUGUuuCCCG-UCA-------------GCUGUG-----CGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 40810 | 0.68 | 0.656546 |
Target: 5'- gCCGAuuucaaggcCAAAGGGCAcaagacggcGcCGAUcguGCGCGACg -3' miRNA: 3'- -GGCU---------GUUUCCCGU---------CaGCUG---UGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 41081 | 0.68 | 0.689379 |
Target: 5'- gCGAuCGAGGGGCGaUCGugAgcCGCGAg -3' miRNA: 3'- gGCU-GUUUCCCGUcAGCugU--GCGCUg -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 41306 | 0.67 | 0.700228 |
Target: 5'- aCCGACGAcagcaccucGGGGCcGaucgCGGCcaGCGUGGCg -3' miRNA: 3'- -GGCUGUU---------UCCCGuCa---GCUG--UGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 41712 | 0.67 | 0.721715 |
Target: 5'- gCCGACGAA-GGCGGcCGGgGCaCGGCc -3' miRNA: 3'- -GGCUGUUUcCCGUCaGCUgUGcGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 41870 | 0.68 | 0.678475 |
Target: 5'- aUCGGCAGAccGCGGUCGgcgaGCugGCGAa -3' miRNA: 3'- -GGCUGUUUccCGUCAGC----UGugCGCUg -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 42035 | 0.66 | 0.763527 |
Target: 5'- gCCGAgCGccAGGGCgccaAGaUCGAC-CGCGGCg -3' miRNA: 3'- -GGCU-GUu-UCCCG----UC-AGCUGuGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 43465 | 0.73 | 0.396742 |
Target: 5'- aCCGGCGGcgacguccugucGGGGCGGUU--CAUGCGGCa -3' miRNA: 3'- -GGCUGUU------------UCCCGUCAGcuGUGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 44376 | 0.72 | 0.414335 |
Target: 5'- aCCGACGAcccGGUGGUCGACGaggcgaagcucgcCGCGGCu -3' miRNA: 3'- -GGCUGUUuc-CCGUCAGCUGU-------------GCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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