miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 52481 0.66 0.803179
Target:  5'- cUCGACAAcauuGGGGCGGcUCaccGCAagugcaacCGCGACa -3'
miRNA:   3'- -GGCUGUU----UCCCGUC-AGc--UGU--------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 51997 0.71 0.484073
Target:  5'- aCCGACGGccaGGCcGUCGACACgaugccuuGCGGCg -3'
miRNA:   3'- -GGCUGUUuc-CCGuCAGCUGUG--------CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 51199 0.67 0.742845
Target:  5'- cUCGGCAccGAGGugcugagccuGCAcGUCGGC-CGCGGCc -3'
miRNA:   3'- -GGCUGU--UUCC----------CGU-CAGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 51160 0.68 0.678475
Target:  5'- aCGACGGGGGGCGccgguaugcacGUaCGcCugGCGAUc -3'
miRNA:   3'- gGCUGUUUCCCGU-----------CA-GCuGugCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 50987 0.69 0.579604
Target:  5'- gCGGCcGGGGGCGuuuUCGuuugcuguGCACGCGGCa -3'
miRNA:   3'- gGCUGuUUCCCGUc--AGC--------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 50903 0.66 0.793508
Target:  5'- gUCGACGucGAGGGCAuGgucaCGAuCAUGCGGa -3'
miRNA:   3'- -GGCUGU--UUCCCGU-Ca---GCU-GUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 49062 0.71 0.515197
Target:  5'- gCUGGCGcucaccGGGCAGgcucgCGGCGCGCaGGCg -3'
miRNA:   3'- -GGCUGUuu----CCCGUCa----GCUGUGCG-CUG- -5'
12952 5' -54.2 NC_003387.1 + 48969 0.66 0.80222
Target:  5'- gCUGGCGAucgugcacgcGGGCAugcggccGUCGAuCGCGUGGCu -3'
miRNA:   3'- -GGCUGUUu---------CCCGU-------CAGCU-GUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 48259 0.67 0.700228
Target:  5'- gCGGCGGGcucGGCGGUCGGCucggccuucgGCGCGGg -3'
miRNA:   3'- gGCUGUUUc--CCGUCAGCUG----------UGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 44717 0.74 0.352808
Target:  5'- gCCGACAGAGGGCacgagAGUC-ACuguUGCGGCc -3'
miRNA:   3'- -GGCUGUUUCCCG-----UCAGcUGu--GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 44376 0.72 0.414335
Target:  5'- aCCGACGAcccGGUGGUCGACGaggcgaagcucgcCGCGGCu -3'
miRNA:   3'- -GGCUGUUuc-CCGUCAGCUGU-------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 43465 0.73 0.396742
Target:  5'- aCCGGCGGcgacguccugucGGGGCGGUU--CAUGCGGCa -3'
miRNA:   3'- -GGCUGUU------------UCCCGUCAGcuGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 42035 0.66 0.763527
Target:  5'- gCCGAgCGccAGGGCgccaAGaUCGAC-CGCGGCg -3'
miRNA:   3'- -GGCU-GUu-UCCCG----UC-AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 41870 0.68 0.678475
Target:  5'- aUCGGCAGAccGCGGUCGgcgaGCugGCGAa -3'
miRNA:   3'- -GGCUGUUUccCGUCAGC----UGugCGCUg -5'
12952 5' -54.2 NC_003387.1 + 41712 0.67 0.721715
Target:  5'- gCCGACGAA-GGCGGcCGGgGCaCGGCc -3'
miRNA:   3'- -GGCUGUUUcCCGUCaGCUgUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 41306 0.67 0.700228
Target:  5'- aCCGACGAcagcaccucGGGGCcGaucgCGGCcaGCGUGGCg -3'
miRNA:   3'- -GGCUGUU---------UCCCGuCa---GCUG--UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 41081 0.68 0.689379
Target:  5'- gCGAuCGAGGGGCGaUCGugAgcCGCGAg -3'
miRNA:   3'- gGCU-GUUUCCCGUcAGCugU--GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 40810 0.68 0.656546
Target:  5'- gCCGAuuucaaggcCAAAGGGCAcaagacggcGcCGAUcguGCGCGACg -3'
miRNA:   3'- -GGCU---------GUUUCCCGU---------CaGCUG---UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 40123 0.68 0.688291
Target:  5'- cCCGGCGucGGGCaAGUucaaggcccacggCGACACcgucgGCGGCc -3'
miRNA:   3'- -GGCUGUuuCCCG-UCA-------------GCUGUG-----CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 39312 0.67 0.721715
Target:  5'- gCCGACAacggcGAGGGCGugcugUGAuCAcCGCGGCg -3'
miRNA:   3'- -GGCUGU-----UUCCCGUca---GCU-GU-GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.