miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 19623 0.74 0.336225
Target:  5'- gCCG-CGAAGGGCg--CGACGgGCGGCu -3'
miRNA:   3'- -GGCuGUUUCCCGucaGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 19139 0.68 0.644441
Target:  5'- cCCGACc--GGGCGguggcucGUCGACgcugucgaggGCGCGGCc -3'
miRNA:   3'- -GGCUGuuuCCCGU-------CAGCUG----------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 18722 0.67 0.709936
Target:  5'- aUGACAGcaGGCAgcucgucGUCGAC-CGCGACc -3'
miRNA:   3'- gGCUGUUucCCGU-------CAGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 18191 0.67 0.711011
Target:  5'- aUCGGCugcGAGGuGCGccUCGGCgACGCGACg -3'
miRNA:   3'- -GGCUGu--UUCC-CGUc-AGCUG-UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 17439 0.67 0.721715
Target:  5'- gCGGCGAacgauAGGcGcCAGUCGuACcCGCGGCg -3'
miRNA:   3'- gGCUGUU-----UCC-C-GUCAGC-UGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 17180 0.67 0.700228
Target:  5'- gCCGcCu--GGGCGG-CGACGgCGCGAa -3'
miRNA:   3'- -GGCuGuuuCCCGUCaGCUGU-GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 17108 0.71 0.494351
Target:  5'- aCGACGAGcuGGCGGgggCGACGCuCGACg -3'
miRNA:   3'- gGCUGUUUc-CCGUCa--GCUGUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 16755 0.67 0.742845
Target:  5'- gCCG-CcGAGGGCcuccUCGAC-CGCGGCc -3'
miRNA:   3'- -GGCuGuUUCCCGuc--AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15614 0.69 0.590536
Target:  5'- gCCGACGucgagcacgucGAGGGCgcgcacggcgaGGUCGAcCAUGuCGGCg -3'
miRNA:   3'- -GGCUGU-----------UUCCCG-----------UCAGCU-GUGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 15558 0.67 0.721715
Target:  5'- cCCGcCGGAGGuGCAGcCGAUuCGCGcCu -3'
miRNA:   3'- -GGCuGUUUCC-CGUCaGCUGuGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 15412 0.69 0.579604
Target:  5'- aCGGCAcgucGGcGCGGUCGACgaccGCGcCGACg -3'
miRNA:   3'- gGCUGUuu--CC-CGUCAGCUG----UGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 15345 0.66 0.793508
Target:  5'- aCCGACAGcGGGGC-GcCGcCGCcCGACa -3'
miRNA:   3'- -GGCUGUU-UCCCGuCaGCuGUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15298 0.74 0.336225
Target:  5'- gCGGCuuGGGGCucuuGGUCGcCAuCGCGACg -3'
miRNA:   3'- gGCUGuuUCCCG----UCAGCuGU-GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15063 0.67 0.711011
Target:  5'- aCCGGau--GGcGUGGUCGugACgGCGACg -3'
miRNA:   3'- -GGCUguuuCC-CGUCAGCugUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 14182 0.68 0.678475
Target:  5'- gCgGGCGuGAGGGC-GUCGugaugGCGCGCGAg -3'
miRNA:   3'- -GgCUGU-UUCCCGuCAGC-----UGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 14095 0.68 0.667527
Target:  5'- aCGGCGAGuaccuGCGGUCGACG-GCGACc -3'
miRNA:   3'- gGCUGUUUcc---CGUCAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 13655 0.67 0.711011
Target:  5'- gCGGCGgcucggucgccGAGGGCGccGUCGACGCuauguCGGCg -3'
miRNA:   3'- gGCUGU-----------UUCCCGU--CAGCUGUGc----GCUG- -5'
12952 5' -54.2 NC_003387.1 + 13569 0.67 0.742845
Target:  5'- cCCGAuCGAcGGGCAggacGUCGGCugGUcGCc -3'
miRNA:   3'- -GGCU-GUUuCCCGU----CAGCUGugCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 13522 0.76 0.268731
Target:  5'- cCCGACcgcGGGGGCcuGGUCGagcuGCACGCGAa -3'
miRNA:   3'- -GGCUGu--UUCCCG--UCAGC----UGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 13298 0.72 0.45388
Target:  5'- aCGGC-AAGGGCGGcggccUCGACGgcaGCGACc -3'
miRNA:   3'- gGCUGuUUCCCGUC-----AGCUGUg--CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.