miRNA display CGI


Results 81 - 100 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 12821 0.66 0.773671
Target:  5'- aCGuCGAAGGGCGGcaagcCGAaGgGCGGCg -3'
miRNA:   3'- gGCuGUUUCCCGUCa----GCUgUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 12741 0.7 0.526813
Target:  5'- aCCG-CAAcaccucGGGGCAGUCGAaccucauggaggacCGCGGCa -3'
miRNA:   3'- -GGCuGUU------UCCCGUCAGCUgu------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 11576 0.67 0.721715
Target:  5'- cCUGACAcucgcAGcGGCcGUCGGCGCGCuGCc -3'
miRNA:   3'- -GGCUGUu----UC-CCGuCAGCUGUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 11253 0.7 0.567629
Target:  5'- gCGACAuuggggcGGGGGCAGUCa--GgGCGGCg -3'
miRNA:   3'- gGCUGU-------UUCCCGUCAGcugUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 11038 0.67 0.742845
Target:  5'- gCGACGccGGGUcgGGUUGACGC-CGAa -3'
miRNA:   3'- gGCUGUuuCCCG--UCAGCUGUGcGCUg -5'
12952 5' -54.2 NC_003387.1 + 9413 0.66 0.753248
Target:  5'- gCCGAgGAGuGGGCcgacgAGUaCGACGCG-GGCg -3'
miRNA:   3'- -GGCUgUUU-CCCG-----UCA-GCUGUGCgCUG- -5'
12952 5' -54.2 NC_003387.1 + 9117 0.66 0.790573
Target:  5'- gCCGACAuucaaggugcucAAGGGCAcugacggcaaccacGUCGuGCAguacaGCGACg -3'
miRNA:   3'- -GGCUGU------------UUCCCGU--------------CAGC-UGUg----CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 8797 0.67 0.707783
Target:  5'- gCCGAuCGAgguuuGGGGUGG-CGACgaaaucggugcgcuGCGCGACa -3'
miRNA:   3'- -GGCU-GUU-----UCCCGUCaGCUG--------------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 8199 0.72 0.424738
Target:  5'- gCGGCGccGGGCGGccCGGCACGaacaGACg -3'
miRNA:   3'- gGCUGUuuCCCGUCa-GCUGUGCg---CUG- -5'
12952 5' -54.2 NC_003387.1 + 8142 0.78 0.196258
Target:  5'- cCCGGCc--GGGCAG-CGAC-CGCGACg -3'
miRNA:   3'- -GGCUGuuuCCCGUCaGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 7651 0.66 0.803179
Target:  5'- aCCGGCccAGGaCGGcccUCGACGCGCucGGCg -3'
miRNA:   3'- -GGCUGuuUCCcGUC---AGCUGUGCG--CUG- -5'
12952 5' -54.2 NC_003387.1 + 6814 0.68 0.688291
Target:  5'- gCCGACGuacugcagaucGGGcGGCAGgucgaucgcccgcUCGGC-CGCGGCg -3'
miRNA:   3'- -GGCUGU-----------UUC-CCGUC-------------AGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 6078 0.7 0.568715
Target:  5'- aUGACGAccgccGGGGCGucGUCGGCAggcucgaacaccUGCGACa -3'
miRNA:   3'- gGCUGUU-----UCCCGU--CAGCUGU------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 5438 0.68 0.656546
Target:  5'- cUCGACcGAGGGC-GcCGACG-GCGGCc -3'
miRNA:   3'- -GGCUGuUUCCCGuCaGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 5139 0.74 0.328149
Target:  5'- gCGACGAGGGGCGcUCGGCGC-CGGu -3'
miRNA:   3'- gGCUGUUUCCCGUcAGCUGUGcGCUg -5'
12952 5' -54.2 NC_003387.1 + 5020 0.68 0.644441
Target:  5'- aCGGCAggcucacGAGGGCGG-CGcUGCGCGAg -3'
miRNA:   3'- gGCUGU-------UUCCCGUCaGCuGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 4149 0.69 0.601503
Target:  5'- gUCGGCGAGgcGGGC-GUCGaugcacgccugGCACGUGACc -3'
miRNA:   3'- -GGCUGUUU--CCCGuCAGC-----------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 3823 0.69 0.579604
Target:  5'- gCGACAAcgaucgucAGGGCGGcgCGGUAgGCGGCg -3'
miRNA:   3'- gGCUGUU--------UCCCGUCa-GCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 3514 0.7 0.525753
Target:  5'- aCCGGCAGAuccguugcGGGCucagcaacGUCGACggccgccgccuGCGCGACc -3'
miRNA:   3'- -GGCUGUUU--------CCCGu-------CAGCUG-----------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 3438 0.69 0.612497
Target:  5'- cUCGGCGAGcaccuGGGCgaccuucacgcGGUCGAUGCGCGuCa -3'
miRNA:   3'- -GGCUGUUU-----CCCG-----------UCAGCUGUGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.