miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 22537 0.7 0.557878
Target:  5'- cCCaGGCcGAGGGCuGGcUCGACGCgGUGGCg -3'
miRNA:   3'- -GG-CUGuUUCCCG-UC-AGCUGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 49062 0.71 0.515197
Target:  5'- gCUGGCGcucaccGGGCAGgcucgCGGCGCGCaGGCg -3'
miRNA:   3'- -GGCUGUuu----CCCGUCa----GCUGUGCG-CUG- -5'
12952 5' -54.2 NC_003387.1 + 21938 0.72 0.434328
Target:  5'- cUCGGCGgcGGGGGCGG-CGGCAggcgucUGCGGCg -3'
miRNA:   3'- -GGCUGU--UUCCCGUCaGCUGU------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 28004 0.76 0.275657
Target:  5'- cCCGAUcGAGGGCAc-CGACgaGCGCGGCa -3'
miRNA:   3'- -GGCUGuUUCCCGUcaGCUG--UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 40810 0.68 0.656546
Target:  5'- gCCGAuuucaaggcCAAAGGGCAcaagacggcGcCGAUcguGCGCGACg -3'
miRNA:   3'- -GGCU---------GUUUCCCGU---------CaGCUG---UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 25898 0.69 0.612497
Target:  5'- cCCGGCGuccAGGGCGGcgcgcucacCGACcaccaGCGCGGCc -3'
miRNA:   3'- -GGCUGUu--UCCCGUCa--------GCUG-----UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 17108 0.71 0.494351
Target:  5'- aCGACGAGcuGGCGGgggCGACGCuCGACg -3'
miRNA:   3'- gGCUGUUUc-CCGUCa--GCUGUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 8142 0.78 0.196258
Target:  5'- cCCGGCc--GGGCAG-CGAC-CGCGACg -3'
miRNA:   3'- -GGCUGuuuCCCGUCaGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 35990 0.69 0.612497
Target:  5'- gCGACGacGAGGGCAcGaUCGACG-GCGAg -3'
miRNA:   3'- gGCUGU--UUCCCGU-C-AGCUGUgCGCUg -5'
12952 5' -54.2 NC_003387.1 + 35154 0.79 0.176184
Target:  5'- aCGACAccagcGAGGGCGGgcuGACGCGCGAa -3'
miRNA:   3'- gGCUGU-----UUCCCGUCag-CUGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 1686 0.71 0.504728
Target:  5'- aCCGACAccgcGGcGGCGGUCGACugGaucGCu -3'
miRNA:   3'- -GGCUGUu---UC-CCGUCAGCUGugCgc-UG- -5'
12952 5' -54.2 NC_003387.1 + 50987 0.69 0.579604
Target:  5'- gCGGCcGGGGGCGuuuUCGuuugcuguGCACGCGGCa -3'
miRNA:   3'- gGCUGuUUCCCGUc--AGC--------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 618 0.71 0.473899
Target:  5'- gCCGAgCAgggcGAGGGCAgcGUCGcCGCcGCGGCa -3'
miRNA:   3'- -GGCU-GU----UUCCCGU--CAGCuGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 33753 0.72 0.434328
Target:  5'- cCCGGCA-AGGGCAacggCGGCGcCGCGAg -3'
miRNA:   3'- -GGCUGUuUCCCGUca--GCUGU-GCGCUg -5'
12952 5' -54.2 NC_003387.1 + 39154 0.73 0.395829
Target:  5'- uCCGcGCcGAGGGCguguacuGGUCGGUGCGCGACa -3'
miRNA:   3'- -GGC-UGuUUCCCG-------UCAGCUGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 5139 0.74 0.328149
Target:  5'- gCGACGAGGGGCGcUCGGCGC-CGGu -3'
miRNA:   3'- gGCUGUUUCCCGUcAGCUGUGcGCUg -5'
12952 5' -54.2 NC_003387.1 + 51160 0.68 0.678475
Target:  5'- aCGACGGGGGGCGccgguaugcacGUaCGcCugGCGAUc -3'
miRNA:   3'- gGCUGUUUCCCGU-----------CA-GCuGugCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 14095 0.68 0.667527
Target:  5'- aCGGCGAGuaccuGCGGUCGACG-GCGACc -3'
miRNA:   3'- gGCUGUUUcc---CGUCAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 5020 0.68 0.644441
Target:  5'- aCGGCAggcucacGAGGGCGG-CGcUGCGCGAg -3'
miRNA:   3'- gGCUGU-------UUCCCGUCaGCuGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 36150 0.69 0.612497
Target:  5'- cCCGACGA--GGCGGUCGGC-CG-GAUg -3'
miRNA:   3'- -GGCUGUUucCCGUCAGCUGuGCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.