miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 39154 0.73 0.395829
Target:  5'- uCCGcGCcGAGGGCguguacuGGUCGGUGCGCGACa -3'
miRNA:   3'- -GGC-UGuUUCCCG-------UCAGCUGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 3304 0.67 0.721715
Target:  5'- gCCGACuc-GGGCgccgaGGUgcUGugGCGUGACa -3'
miRNA:   3'- -GGCUGuuuCCCG-----UCA--GCugUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 41712 0.67 0.721715
Target:  5'- gCCGACGAA-GGCGGcCGGgGCaCGGCc -3'
miRNA:   3'- -GGCUGUUUcCCGUCaGCUgUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 51199 0.67 0.742845
Target:  5'- cUCGGCAccGAGGugcugagccuGCAcGUCGGC-CGCGGCc -3'
miRNA:   3'- -GGCUGU--UUCC----------CGU-CAGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 13569 0.67 0.742845
Target:  5'- cCCGAuCGAcGGGCAggacGUCGGCugGUcGCc -3'
miRNA:   3'- -GGCU-GUUuCCCGU----CAGCUGugCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 8797 0.67 0.707783
Target:  5'- gCCGAuCGAgguuuGGGGUGG-CGACgaaaucggugcgcuGCGCGACa -3'
miRNA:   3'- -GGCU-GUU-----UCCCGUCaGCUG--------------UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 33865 0.66 0.773671
Target:  5'- uUGACGAGGuGGC-GUCGugAUGC-ACa -3'
miRNA:   3'- gGCUGUUUC-CCGuCAGCugUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 1476 0.66 0.772663
Target:  5'- gUCGAgGGccAGGGC-GUCGACGucgagcaccaggcCGCGGCc -3'
miRNA:   3'- -GGCUgUU--UCCCGuCAGCUGU-------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 22316 0.69 0.609196
Target:  5'- cCCGACAGcucGGGCagccacacgaucauGGUCGugAUGCGcaGCg -3'
miRNA:   3'- -GGCUGUUu--CCCG--------------UCAGCugUGCGC--UG- -5'
12952 5' -54.2 NC_003387.1 + 17439 0.67 0.721715
Target:  5'- gCGGCGAacgauAGGcGcCAGUCGuACcCGCGGCg -3'
miRNA:   3'- gGCUGUU-----UCC-C-GUCAGC-UGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 11576 0.67 0.721715
Target:  5'- cCUGACAcucgcAGcGGCcGUCGGCGCGCuGCc -3'
miRNA:   3'- -GGCUGUu----UC-CCGuCAGCUGUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 3438 0.69 0.612497
Target:  5'- cUCGGCGAGcaccuGGGCgaccuucacgcGGUCGAUGCGCGuCa -3'
miRNA:   3'- -GGCUGUUU-----CCCG-----------UCAGCUGUGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 25278 0.69 0.601503
Target:  5'- gUCGcACAucGGGCAGUCaGCcaGgGCGACg -3'
miRNA:   3'- -GGC-UGUuuCCCGUCAGcUG--UgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15614 0.69 0.590536
Target:  5'- gCCGACGucgagcacgucGAGGGCgcgcacggcgaGGUCGAcCAUGuCGGCg -3'
miRNA:   3'- -GGCUGU-----------UUCCCG-----------UCAGCU-GUGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 15412 0.69 0.579604
Target:  5'- aCGGCAcgucGGcGCGGUCGACgaccGCGcCGACg -3'
miRNA:   3'- gGCUGUuu--CC-CGUCAGCUG----UGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 3823 0.69 0.579604
Target:  5'- gCGACAAcgaucgucAGGGCGGcgCGGUAgGCGGCg -3'
miRNA:   3'- gGCUGUU--------UCCCGUCa-GCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 6078 0.7 0.568715
Target:  5'- aUGACGAccgccGGGGCGucGUCGGCAggcucgaacaccUGCGACa -3'
miRNA:   3'- gGCUGUU-----UCCCGU--CAGCUGU------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 4149 0.69 0.601503
Target:  5'- gUCGGCGAGgcGGGC-GUCGaugcacgccugGCACGUGACc -3'
miRNA:   3'- -GGCUGUUU--CCCGuCAGC-----------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 41306 0.67 0.700228
Target:  5'- aCCGACGAcagcaccucGGGGCcGaucgCGGCcaGCGUGGCg -3'
miRNA:   3'- -GGCUGUU---------UCCCGuCa---GCUG--UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 34943 0.67 0.709936
Target:  5'- uCCGACAuGGGGaucguuuCGGcCGACGcCGUGAUg -3'
miRNA:   3'- -GGCUGUuUCCC-------GUCaGCUGU-GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.