miRNA display CGI


Results 81 - 100 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 41870 0.68 0.678475
Target:  5'- aUCGGCAGAccGCGGUCGgcgaGCugGCGAa -3'
miRNA:   3'- -GGCUGUUUccCGUCAGC----UGugCGCUg -5'
12952 5' -54.2 NC_003387.1 + 33675 0.68 0.678475
Target:  5'- gCGACAccGGGaugaUCGGCAgGCGGCc -3'
miRNA:   3'- gGCUGUuuCCCguc-AGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 25555 0.71 0.504728
Target:  5'- aCGcCGAGGGGCAGcagcuucgCGACGCGCu-- -3'
miRNA:   3'- gGCuGUUUCCCGUCa-------GCUGUGCGcug -5'
12952 5' -54.2 NC_003387.1 + 51997 0.71 0.484073
Target:  5'- aCCGACGGccaGGCcGUCGACACgaugccuuGCGGCg -3'
miRNA:   3'- -GGCUGUUuc-CCGuCAGCUGUG--------CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 22660 0.71 0.470867
Target:  5'- cCCGGCGGccgucAGGGCGcgcucgugggcgguGUCGACG-GCGGCg -3'
miRNA:   3'- -GGCUGUU-----UCCCGU--------------CAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 725 0.73 0.409659
Target:  5'- gCCGACAGgucGGGcaggugcgccaggauGCGGUCGGCcacCGCGGCa -3'
miRNA:   3'- -GGCUGUU---UCC---------------CGUCAGCUGu--GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 8199 0.72 0.424738
Target:  5'- gCGGCGccGGGCGGccCGGCACGaacaGACg -3'
miRNA:   3'- gGCUGUuuCCCGUCa-GCUGUGCg---CUG- -5'
12952 5' -54.2 NC_003387.1 + 44717 0.74 0.352808
Target:  5'- gCCGACAGAGGGCacgagAGUC-ACuguUGCGGCc -3'
miRNA:   3'- -GGCUGUUUCCCG-----UCAGcUGu--GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15298 0.74 0.336225
Target:  5'- gCGGCuuGGGGCucuuGGUCGcCAuCGCGACg -3'
miRNA:   3'- gGCUGuuUCCCG----UCAGCuGU-GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 19859 0.75 0.29729
Target:  5'- gCUGGCAGucGGcGCAGUCGGCgACGCGGa -3'
miRNA:   3'- -GGCUGUUu-CC-CGUCAGCUG-UGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 6078 0.7 0.568715
Target:  5'- aUGACGAccgccGGGGCGucGUCGGCAggcucgaacaccUGCGACa -3'
miRNA:   3'- gGCUGUU-----UCCCGU--CAGCUGU------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 3823 0.69 0.579604
Target:  5'- gCGACAAcgaucgucAGGGCGGcgCGGUAgGCGGCg -3'
miRNA:   3'- gGCUGUU--------UCCCGUCa-GCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 24137 0.68 0.645542
Target:  5'- gCGGCGguguugagcuuGAGGGCGucGUCGACG-GCGAUc -3'
miRNA:   3'- gGCUGU-----------UUCCCGU--CAGCUGUgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 32746 0.68 0.645542
Target:  5'- aCGGCcccGAGGGCagcguugugaAGUCGACGCGguaccucuugccCGACg -3'
miRNA:   3'- gGCUGu--UUCCCG----------UCAGCUGUGC------------GCUG- -5'
12952 5' -54.2 NC_003387.1 + 3438 0.69 0.612497
Target:  5'- cUCGGCGAGcaccuGGGCgaccuucacgcGGUCGAUGCGCGuCa -3'
miRNA:   3'- -GGCUGUUU-----CCCG-----------UCAGCUGUGCGCuG- -5'
12952 5' -54.2 NC_003387.1 + 22316 0.69 0.609196
Target:  5'- cCCGACAGcucGGGCagccacacgaucauGGUCGugAUGCGcaGCg -3'
miRNA:   3'- -GGCUGUUu--CCCG--------------UCAGCugUGCGC--UG- -5'
12952 5' -54.2 NC_003387.1 + 4149 0.69 0.601503
Target:  5'- gUCGGCGAGgcGGGC-GUCGaugcacgccugGCACGUGACc -3'
miRNA:   3'- -GGCUGUUU--CCCGuCAGC-----------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 25278 0.69 0.601503
Target:  5'- gUCGcACAucGGGCAGUCaGCcaGgGCGACg -3'
miRNA:   3'- -GGC-UGUuuCCCGUCAGcUG--UgCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 15614 0.69 0.590536
Target:  5'- gCCGACGucgagcacgucGAGGGCgcgcacggcgaGGUCGAcCAUGuCGGCg -3'
miRNA:   3'- -GGCUGU-----------UUCCCG-----------UCAGCU-GUGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 15412 0.69 0.579604
Target:  5'- aCGGCAcgucGGcGCGGUCGACgaccGCGcCGACg -3'
miRNA:   3'- gGCUGUuu--CC-CGUCAGCUG----UGC-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.