Results 101 - 110 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12952 | 5' | -54.2 | NC_003387.1 | + | 32746 | 0.68 | 0.645542 |
Target: 5'- aCGGCcccGAGGGCagcguugugaAGUCGACGCGguaccucuugccCGACg -3' miRNA: 3'- gGCUGu--UUCCCG----------UCAGCUGUGC------------GCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 3438 | 0.69 | 0.612497 |
Target: 5'- cUCGGCGAGcaccuGGGCgaccuucacgcGGUCGAUGCGCGuCa -3' miRNA: 3'- -GGCUGUUU-----CCCG-----------UCAGCUGUGCGCuG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 22316 | 0.69 | 0.609196 |
Target: 5'- cCCGACAGcucGGGCagccacacgaucauGGUCGugAUGCGcaGCg -3' miRNA: 3'- -GGCUGUUu--CCCG--------------UCAGCugUGCGC--UG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 4149 | 0.69 | 0.601503 |
Target: 5'- gUCGGCGAGgcGGGC-GUCGaugcacgccugGCACGUGACc -3' miRNA: 3'- -GGCUGUUU--CCCGuCAGC-----------UGUGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 25278 | 0.69 | 0.601503 |
Target: 5'- gUCGcACAucGGGCAGUCaGCcaGgGCGACg -3' miRNA: 3'- -GGC-UGUuuCCCGUCAGcUG--UgCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 15614 | 0.69 | 0.590536 |
Target: 5'- gCCGACGucgagcacgucGAGGGCgcgcacggcgaGGUCGAcCAUGuCGGCg -3' miRNA: 3'- -GGCUGU-----------UUCCCG-----------UCAGCU-GUGC-GCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 15412 | 0.69 | 0.579604 |
Target: 5'- aCGGCAcgucGGcGCGGUCGACgaccGCGcCGACg -3' miRNA: 3'- gGCUGUuu--CC-CGUCAGCUG----UGC-GCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 3823 | 0.69 | 0.579604 |
Target: 5'- gCGACAAcgaucgucAGGGCGGcgCGGUAgGCGGCg -3' miRNA: 3'- gGCUGUU--------UCCCGUCa-GCUGUgCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 6078 | 0.7 | 0.568715 |
Target: 5'- aUGACGAccgccGGGGCGucGUCGGCAggcucgaacaccUGCGACa -3' miRNA: 3'- gGCUGUU-----UCCCGU--CAGCUGU------------GCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 19859 | 0.75 | 0.29729 |
Target: 5'- gCUGGCAGucGGcGCAGUCGGCgACGCGGa -3' miRNA: 3'- -GGCUGUUu-CC-CGUCAGCUG-UGCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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