miRNA display CGI


Results 81 - 100 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12952 5' -54.2 NC_003387.1 + 1570 0.74 0.335411
Target:  5'- aCGGCGAAGcgccuaacgcccuGGCGGUCGACAUGUcGCa -3'
miRNA:   3'- gGCUGUUUC-------------CCGUCAGCUGUGCGcUG- -5'
12952 5' -54.2 NC_003387.1 + 5139 0.74 0.328149
Target:  5'- gCGACGAGGGGCGcUCGGCGC-CGGu -3'
miRNA:   3'- gGCUGUUUCCCGUcAGCUGUGcGCUg -5'
12952 5' -54.2 NC_003387.1 + 28004 0.76 0.275657
Target:  5'- cCCGAUcGAGGGCAc-CGACgaGCGCGGCa -3'
miRNA:   3'- -GGCUGuUUCCCGUcaGCUG--UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 8142 0.78 0.196258
Target:  5'- cCCGGCc--GGGCAG-CGAC-CGCGACg -3'
miRNA:   3'- -GGCUGuuuCCCGUCaGCUGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 35154 0.79 0.176184
Target:  5'- aCGACAccagcGAGGGCGGgcuGACGCGCGAa -3'
miRNA:   3'- gGCUGU-----UUCCCGUCag-CUGUGCGCUg -5'
12952 5' -54.2 NC_003387.1 + 729 0.72 0.45388
Target:  5'- gUCGACGGccuGGCcGUCGguGCGCGCGACg -3'
miRNA:   3'- -GGCUGUUuc-CCGuCAGC--UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 618 0.71 0.473899
Target:  5'- gCCGAgCAgggcGAGGGCAgcGUCGcCGCcGCGGCa -3'
miRNA:   3'- -GGCU-GU----UUCCCGU--CAGCuGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 21227 0.71 0.494351
Target:  5'- gCgGGCGcAGGGCgauccGGUCGGCAuggugcgcCGCGACg -3'
miRNA:   3'- -GgCUGUuUCCCG-----UCAGCUGU--------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 25898 0.69 0.612497
Target:  5'- cCCGGCGuccAGGGCGGcgcgcucacCGACcaccaGCGCGGCc -3'
miRNA:   3'- -GGCUGUu--UCCCGUCa--------GCUG-----UGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 35990 0.69 0.612497
Target:  5'- gCGACGacGAGGGCAcGaUCGACG-GCGAg -3'
miRNA:   3'- gGCUGU--UUCCCGU-C-AGCUGUgCGCUg -5'
12952 5' -54.2 NC_003387.1 + 33695 0.69 0.612497
Target:  5'- cUCGGCGAccGGCGGUgUGACGCaGUGGCu -3'
miRNA:   3'- -GGCUGUUucCCGUCA-GCUGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 29250 0.69 0.590536
Target:  5'- gCCGACAAGGucgaGCAGUaCGAgGCGaUGGCa -3'
miRNA:   3'- -GGCUGUUUCc---CGUCA-GCUgUGC-GCUG- -5'
12952 5' -54.2 NC_003387.1 + 50987 0.69 0.579604
Target:  5'- gCGGCcGGGGGCGuuuUCGuuugcuguGCACGCGGCa -3'
miRNA:   3'- gGCUGuUUCCCGUc--AGC--------UGUGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 22537 0.7 0.557878
Target:  5'- cCCaGGCcGAGGGCuGGcUCGACGCgGUGGCg -3'
miRNA:   3'- -GG-CUGuUUCCCG-UC-AGCUGUG-CGCUG- -5'
12952 5' -54.2 NC_003387.1 + 2522 0.7 0.540665
Target:  5'- aCUGAUGAGGGGCcgguguuccgcacgcGGUCG-C-CGCGGCa -3'
miRNA:   3'- -GGCUGUUUCCCG---------------UCAGCuGuGCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 12741 0.7 0.526813
Target:  5'- aCCG-CAAcaccucGGGGCAGUCGAaccucauggaggacCGCGGCa -3'
miRNA:   3'- -GGCuGUU------UCCCGUCAGCUgu------------GCGCUG- -5'
12952 5' -54.2 NC_003387.1 + 49062 0.71 0.515197
Target:  5'- gCUGGCGcucaccGGGCAGgcucgCGGCGCGCaGGCg -3'
miRNA:   3'- -GGCUGUuu----CCCGUCa----GCUGUGCG-CUG- -5'
12952 5' -54.2 NC_003387.1 + 1686 0.71 0.504728
Target:  5'- aCCGACAccgcGGcGGCGGUCGACugGaucGCu -3'
miRNA:   3'- -GGCUGUu---UC-CCGUCAGCUGugCgc-UG- -5'
12952 5' -54.2 NC_003387.1 + 17108 0.71 0.494351
Target:  5'- aCGACGAGcuGGCGGgggCGACGCuCGACg -3'
miRNA:   3'- gGCUGUUUc-CCGUCa--GCUGUGcGCUG- -5'
12952 5' -54.2 NC_003387.1 + 35886 0.71 0.494351
Target:  5'- gCGuCAAGGGGCAcGUCGACcUGCuGCg -3'
miRNA:   3'- gGCuGUUUCCCGU-CAGCUGuGCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.