Results 101 - 110 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12952 | 5' | -54.2 | NC_003387.1 | + | 35990 | 0.69 | 0.612497 |
Target: 5'- gCGACGacGAGGGCAcGaUCGACG-GCGAg -3' miRNA: 3'- gGCUGU--UUCCCGU-C-AGCUGUgCGCUg -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 33695 | 0.69 | 0.612497 |
Target: 5'- cUCGGCGAccGGCGGUgUGACGCaGUGGCu -3' miRNA: 3'- -GGCUGUUucCCGUCA-GCUGUG-CGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 29250 | 0.69 | 0.590536 |
Target: 5'- gCCGACAAGGucgaGCAGUaCGAgGCGaUGGCa -3' miRNA: 3'- -GGCUGUUUCc---CGUCA-GCUgUGC-GCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 50987 | 0.69 | 0.579604 |
Target: 5'- gCGGCcGGGGGCGuuuUCGuuugcuguGCACGCGGCa -3' miRNA: 3'- gGCUGuUUCCCGUc--AGC--------UGUGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 22537 | 0.7 | 0.557878 |
Target: 5'- cCCaGGCcGAGGGCuGGcUCGACGCgGUGGCg -3' miRNA: 3'- -GG-CUGuUUCCCG-UC-AGCUGUG-CGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 2522 | 0.7 | 0.540665 |
Target: 5'- aCUGAUGAGGGGCcgguguuccgcacgcGGUCG-C-CGCGGCa -3' miRNA: 3'- -GGCUGUUUCCCG---------------UCAGCuGuGCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 12741 | 0.7 | 0.526813 |
Target: 5'- aCCG-CAAcaccucGGGGCAGUCGAaccucauggaggacCGCGGCa -3' miRNA: 3'- -GGCuGUU------UCCCGUCAGCUgu------------GCGCUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 49062 | 0.71 | 0.515197 |
Target: 5'- gCUGGCGcucaccGGGCAGgcucgCGGCGCGCaGGCg -3' miRNA: 3'- -GGCUGUuu----CCCGUCa----GCUGUGCG-CUG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 1686 | 0.71 | 0.504728 |
Target: 5'- aCCGACAccgcGGcGGCGGUCGACugGaucGCu -3' miRNA: 3'- -GGCUGUu---UC-CCGUCAGCUGugCgc-UG- -5' |
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12952 | 5' | -54.2 | NC_003387.1 | + | 33949 | 1.12 | 0.000807 |
Target: 5'- cCCGACAAAGGGCAGUCGACACGCGACg -3' miRNA: 3'- -GGCUGUUUCCCGUCAGCUGUGCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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