miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12956 3' -57.7 NC_003387.1 + 7975 0.66 0.565317
Target:  5'- -cGGCGGGCgggUGCUGCGCUUcGG-CGCc -3'
miRNA:   3'- cuCUGUCCGa--GCGGCGUGGA-CUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 41408 0.66 0.554611
Target:  5'- uGGACAaucucgccGaGCUUGCCGCugucGCCgccGGUCGCa -3'
miRNA:   3'- cUCUGU--------C-CGAGCGGCG----UGGa--CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 8769 0.66 0.553544
Target:  5'- --uGCGGGCcuUCGCCGUgcggcggcgggcgACCUGAUuccCGCu -3'
miRNA:   3'- cucUGUCCG--AGCGGCG-------------UGGACUA---GCG- -5'
12956 3' -57.7 NC_003387.1 + 13896 0.66 0.554611
Target:  5'- cGGGCAGGUUCgacgucggGUgGCGCCcGAUCGg -3'
miRNA:   3'- cUCUGUCCGAG--------CGgCGUGGaCUAGCg -5'
12956 3' -57.7 NC_003387.1 + 22350 0.67 0.491884
Target:  5'- cGGugGGGCUgGCCcaggcGCACCcGG-CGCa -3'
miRNA:   3'- cUCugUCCGAgCGG-----CGUGGaCUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 27255 0.67 0.471694
Target:  5'- cGAGGC-GGCcCGgCaUGCCUGGUCGCg -3'
miRNA:   3'- -CUCUGuCCGaGCgGcGUGGACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 29420 0.67 0.512463
Target:  5'- gGAGG-AGGC-CGCCGCAgcggcCCgcgcGGUCGCu -3'
miRNA:   3'- -CUCUgUCCGaGCGGCGU-----GGa---CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 2173 0.67 0.512463
Target:  5'- cGAG-CA-GCUCGgCGC-CUUGGUCGCc -3'
miRNA:   3'- -CUCuGUcCGAGCgGCGuGGACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 6100 0.67 0.512463
Target:  5'- -cGGCAGGCUCGaa-CACCUGcgacaugCGCg -3'
miRNA:   3'- cuCUGUCCGAGCggcGUGGACua-----GCG- -5'
12956 3' -57.7 NC_003387.1 + 10442 0.67 0.491884
Target:  5'- -cGGCGGGCaUCGacagCGCGCUgucGGUCGCc -3'
miRNA:   3'- cuCUGUCCG-AGCg---GCGUGGa--CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 37775 0.67 0.502127
Target:  5'- aGGGCGuGCUCaagCGCGCCUGggCGCa -3'
miRNA:   3'- cUCUGUcCGAGcg-GCGUGGACuaGCG- -5'
12956 3' -57.7 NC_003387.1 + 34136 0.67 0.522886
Target:  5'- cGAGGCGGGCgacccugaCGCCugggucgacccGCACCUGuggGCa -3'
miRNA:   3'- -CUCUGUCCGa-------GCGG-----------CGUGGACuagCG- -5'
12956 3' -57.7 NC_003387.1 + 22944 0.67 0.502127
Target:  5'- -cGGCAuGCggucaCGCCGUAgCUGAUCGUc -3'
miRNA:   3'- cuCUGUcCGa----GCGGCGUgGACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 14641 0.67 0.481737
Target:  5'- -cGuCAGGC-CGCCGCGCacagUGA-CGCg -3'
miRNA:   3'- cuCuGUCCGaGCGGCGUGg---ACUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 24704 0.67 0.471694
Target:  5'- aGGAUcGGCUUGCCGCGCUc-GUCGg -3'
miRNA:   3'- cUCUGuCCGAGCGGCGUGGacUAGCg -5'
12956 3' -57.7 NC_003387.1 + 4154 0.67 0.502127
Target:  5'- cGAGGCGGGCgucgaugcaCGCCugGCACgUGAccucggCGCg -3'
miRNA:   3'- -CUCUGUCCGa--------GCGG--CGUGgACUa-----GCG- -5'
12956 3' -57.7 NC_003387.1 + 9395 0.68 0.451932
Target:  5'- cGAG-CAGGaaaUUGCCcgGCGCUgUGAUCGCg -3'
miRNA:   3'- -CUCuGUCCg--AGCGG--CGUGG-ACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 24837 0.68 0.411042
Target:  5'- cGGGCGGcuggccgggcuccuGCUCGaCCGCGCCggugucGAUCGUg -3'
miRNA:   3'- cUCUGUC--------------CGAGC-GGCGUGGa-----CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 10408 0.68 0.413821
Target:  5'- -uGAUcuGCUCGUCGCGCCacgccuUGAUCGUc -3'
miRNA:   3'- cuCUGucCGAGCGGCGUGG------ACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 12422 0.68 0.442222
Target:  5'- cAGGCGGcGCUUGCCGUcgucguccucgAUCgaggGGUCGCg -3'
miRNA:   3'- cUCUGUC-CGAGCGGCG-----------UGGa---CUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.