Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12956 | 3' | -57.7 | NC_003387.1 | + | 52253 | 0.73 | 0.2078 |
Target: 5'- cGAGACugacGGCaaCGCCGCGCCcGAgcgCGCg -3' miRNA: 3'- -CUCUGu---CCGa-GCGGCGUGGaCUa--GCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 36657 | 0.73 | 0.207254 |
Target: 5'- cGAGugGcaucaccGGCUCGCCG-ACCUGGcCGCg -3' miRNA: 3'- -CUCugU-------CCGAGCGGCgUGGACUaGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 46352 | 0.74 | 0.201859 |
Target: 5'- cGAGGCGGGCUUGUCGgUgccgaaaaugacgGCCUGGUCGa -3' miRNA: 3'- -CUCUGUCCGAGCGGC-G-------------UGGACUAGCg -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 44396 | 0.76 | 0.13129 |
Target: 5'- cGAGGCGaaGCUCGCCGCGgCUGA-CGCu -3' miRNA: 3'- -CUCUGUc-CGAGCGGCGUgGACUaGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 35356 | 1.1 | 0.00041 |
Target: 5'- cGAGACAGGCUCGCCGCACCUGAUCGCc -3' miRNA: 3'- -CUCUGUCCGAGCGGCGUGGACUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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