miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12956 3' -57.7 NC_003387.1 + 21602 0.66 0.586879
Target:  5'- ---uCGGGCggCGCC-CACCUGG-CGCu -3'
miRNA:   3'- cucuGUCCGa-GCGGcGUGGACUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 22944 0.67 0.502127
Target:  5'- -cGGCAuGCggucaCGCCGUAgCUGAUCGUc -3'
miRNA:   3'- cuCUGUcCGa----GCGGCGUgGACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 14641 0.67 0.481737
Target:  5'- -cGuCAGGC-CGCCGCGCacagUGA-CGCg -3'
miRNA:   3'- cuCuGUCCGaGCGGCGUGg---ACUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 24704 0.67 0.471694
Target:  5'- aGGAUcGGCUUGCCGCGCUc-GUCGg -3'
miRNA:   3'- cUCUGuCCGAGCGGCGUGGacUAGCg -5'
12956 3' -57.7 NC_003387.1 + 49674 0.69 0.404606
Target:  5'- cGAGGCGGGCgggaaCGCCuGCGCCUucaccucggGAUCu- -3'
miRNA:   3'- -CUCUGUCCGa----GCGG-CGUGGA---------CUAGcg -5'
12956 3' -57.7 NC_003387.1 + 7145 0.69 0.396424
Target:  5'- cGAGGCccGGCUCcucgGCCGUGCCgacgagcuggcggcgGAUCGCc -3'
miRNA:   3'- -CUCUGu-CCGAG----CGGCGUGGa--------------CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 33387 0.69 0.38657
Target:  5'- cGGcCAGGUucUCGCCGCGCUc-GUCGCu -3'
miRNA:   3'- cUCuGUCCG--AGCGGCGUGGacUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 8934 0.69 0.377753
Target:  5'- cGAGgaaGCGGGCgaCGCCGguCCUGGugUCGUc -3'
miRNA:   3'- -CUC---UGUCCGa-GCGGCguGGACU--AGCG- -5'
12956 3' -57.7 NC_003387.1 + 5851 0.69 0.377753
Target:  5'- --cGCAGGUgggggCGCCGCAaccguCCUGGUgCGCu -3'
miRNA:   3'- cucUGUCCGa----GCGGCGU-----GGACUA-GCG- -5'
12956 3' -57.7 NC_003387.1 + 12422 0.68 0.442222
Target:  5'- cAGGCGGcGCUUGCCGUcgucguccucgAUCgaggGGUCGCg -3'
miRNA:   3'- cUCUGUC-CGAGCGGCG-----------UGGa---CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 6058 0.7 0.352124
Target:  5'- cGGGCAGGUUCGagCGCACCaUGAcgacCGCc -3'
miRNA:   3'- cUCUGUCCGAGCg-GCGUGG-ACUa---GCG- -5'
12956 3' -57.7 NC_003387.1 + 346 0.71 0.312212
Target:  5'- -cGAUuGGCUCGCCGCAaacgugacagUCUGGcucgUCGCg -3'
miRNA:   3'- cuCUGuCCGAGCGGCGU----------GGACU----AGCG- -5'
12956 3' -57.7 NC_003387.1 + 29860 0.71 0.282823
Target:  5'- cGAGuGCAGGCUgaucagugCGCCuugcGCGCC-GAUCGCg -3'
miRNA:   3'- -CUC-UGUCCGA--------GCGG----CGUGGaCUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 46591 0.72 0.26897
Target:  5'- cGGGCAGGgUCGCCaGCACCggcaGGUgCGUg -3'
miRNA:   3'- cUCUGUCCgAGCGG-CGUGGa---CUA-GCG- -5'
12956 3' -57.7 NC_003387.1 + 13168 0.72 0.249223
Target:  5'- cGAGGuCAGGCUCG-CGUGCCaUGAUCaGCc -3'
miRNA:   3'- -CUCU-GUCCGAGCgGCGUGG-ACUAG-CG- -5'
12956 3' -57.7 NC_003387.1 + 46352 0.74 0.201859
Target:  5'- cGAGGCGGGCUUGUCGgUgccgaaaaugacgGCCUGGUCGa -3'
miRNA:   3'- -CUCUGUCCGAGCGGC-G-------------UGGACUAGCg -5'
12956 3' -57.7 NC_003387.1 + 10408 0.68 0.413821
Target:  5'- -uGAUcuGCUCGUCGCGCCacgccuUGAUCGUc -3'
miRNA:   3'- cuCUGucCGAGCGGCGUGG------ACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 3545 0.68 0.442222
Target:  5'- -cGAC-GGC-CGCCGCcugcgcgaccGCCUGcgCGCu -3'
miRNA:   3'- cuCUGuCCGaGCGGCG----------UGGACuaGCG- -5'
12956 3' -57.7 NC_003387.1 + 10253 0.68 0.442222
Target:  5'- -cGGCGGGaUCGCC-CGgUUGGUCGCg -3'
miRNA:   3'- cuCUGUCCgAGCGGcGUgGACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 9395 0.68 0.451932
Target:  5'- cGAG-CAGGaaaUUGCCcgGCGCUgUGAUCGCg -3'
miRNA:   3'- -CUCuGUCCg--AGCGG--CGUGG-ACUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.