Results 61 - 65 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12956 | 3' | -57.7 | NC_003387.1 | + | 21708 | 0.69 | 0.369072 |
Target: 5'- cGAG-CGcGGCccgCGCCG-ACCUGGUCGUg -3' miRNA: 3'- -CUCuGU-CCGa--GCGGCgUGGACUAGCG- -5' |
|||||||
12956 | 3' | -57.7 | NC_003387.1 | + | 44941 | 0.68 | 0.451932 |
Target: 5'- cGAGGCgcucgcgaAGGCUCagGCCGCGgCUcaggccgcGAUCGCc -3' miRNA: 3'- -CUCUG--------UCCGAG--CGGCGUgGA--------CUAGCG- -5' |
|||||||
12956 | 3' | -57.7 | NC_003387.1 | + | 27255 | 0.67 | 0.471694 |
Target: 5'- cGAGGC-GGCcCGgCaUGCCUGGUCGCg -3' miRNA: 3'- -CUCUGuCCGaGCgGcGUGGACUAGCG- -5' |
|||||||
12956 | 3' | -57.7 | NC_003387.1 | + | 22350 | 0.67 | 0.491884 |
Target: 5'- cGGugGGGCUgGCCcaggcGCACCcGG-CGCa -3' miRNA: 3'- cUCugUCCGAgCGG-----CGUGGaCUaGCG- -5' |
|||||||
12956 | 3' | -57.7 | NC_003387.1 | + | 35356 | 1.1 | 0.00041 |
Target: 5'- cGAGACAGGCUCGCCGCACCUGAUCGCc -3' miRNA: 3'- -CUCUGUCCGAGCGGCGUGGACUAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home