miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 3' -57.7 NC_003387.1 + 46385 0.66 0.531531
Target:  5'- gGUGGGCGCAGCGUGUuGaCAGCUCa-- -3'
miRNA:   3'- aCGCUUGUGUCGCGUA-C-GUCGGGgcu -5'
12957 3' -57.7 NC_003387.1 + 50953 0.66 0.531531
Target:  5'- -cUGAACGcCAGCGCGaaGCGcCCCCGAg -3'
miRNA:   3'- acGCUUGU-GUCGCGUa-CGUcGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 4293 0.66 0.531531
Target:  5'- cGCGGGCgaGCAGCGCAccGCGa-CCCGGc -3'
miRNA:   3'- aCGCUUG--UGUCGCGUa-CGUcgGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 44607 0.66 0.531531
Target:  5'- aGCG-ACGCcgucgggccguGGCGCgagcGUGUGGCCCUGGc -3'
miRNA:   3'- aCGCuUGUG-----------UCGCG----UACGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 5914 0.66 0.531531
Target:  5'- aGCGAgcuaACGCAGCGCG---GGCCgUCGAa -3'
miRNA:   3'- aCGCU----UGUGUCGCGUacgUCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 21847 0.66 0.531531
Target:  5'- gUGUGGACAcCGGCGCAccaGGUgCCGAc -3'
miRNA:   3'- -ACGCUUGU-GUCGCGUacgUCGgGGCU- -5'
12957 3' -57.7 NC_003387.1 + 10254 0.66 0.528349
Target:  5'- gGCGGGaucgcccgguugguCGCGGCGCAcuCGGCCuuGAa -3'
miRNA:   3'- aCGCUU--------------GUGUCGCGUacGUCGGggCU- -5'
12957 3' -57.7 NC_003387.1 + 22938 0.66 0.525174
Target:  5'- cGcCGGAUACAcGCGCAgcugaccgcgugggGC-GCCCCGGu -3'
miRNA:   3'- aC-GCUUGUGU-CGCGUa-------------CGuCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 966 0.66 0.520952
Target:  5'- gGCGggUAguuGUGUAUGCcGCCgCCGAg -3'
miRNA:   3'- aCGCuuGUgu-CGCGUACGuCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 8190 0.66 0.520952
Target:  5'- -uCGAGCccuGCGGCGCcggGCGGCCCgGc -3'
miRNA:   3'- acGCUUG---UGUCGCGua-CGUCGGGgCu -5'
12957 3' -57.7 NC_003387.1 + 20583 0.66 0.519899
Target:  5'- gGCGGcgGCACuccucgauguGGCGCAUGaguugcauugcguCAGCCCCu- -3'
miRNA:   3'- aCGCU--UGUG----------UCGCGUAC-------------GUCGGGGcu -5'
12957 3' -57.7 NC_003387.1 + 50364 0.66 0.516744
Target:  5'- cGCGuACGUGGCGCucgacgccgacgGCGGCCUCGAc -3'
miRNA:   3'- aCGCuUGUGUCGCGua----------CGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 38070 0.66 0.510457
Target:  5'- aGCGAGCGCcgcgucacuguGCGCG-GCGGCCUgaCGGg -3'
miRNA:   3'- aCGCUUGUGu----------CGCGUaCGUCGGG--GCU- -5'
12957 3' -57.7 NC_003387.1 + 38031 0.66 0.510457
Target:  5'- -aCGGAuCGCGGCGacgGC-GCCCCGAu -3'
miRNA:   3'- acGCUU-GUGUCGCguaCGuCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 13580 0.66 0.510457
Target:  5'- gGCaGGACGuCGGCuggucgccGCAgucugGCAGCCCCGc -3'
miRNA:   3'- aCG-CUUGU-GUCG--------CGUa----CGUCGGGGCu -5'
12957 3' -57.7 NC_003387.1 + 18742 0.66 0.510457
Target:  5'- aGCGG--GCAGCGCAUGCAcaugcGCUuuGc -3'
miRNA:   3'- aCGCUugUGUCGCGUACGU-----CGGggCu -5'
12957 3' -57.7 NC_003387.1 + 25921 0.67 0.501088
Target:  5'- gGCGAAUACGGCGCcccacacccacaugcUGCGGUgCCu- -3'
miRNA:   3'- aCGCUUGUGUCGCGu--------------ACGUCGgGGcu -5'
12957 3' -57.7 NC_003387.1 + 50695 0.67 0.500051
Target:  5'- gGCGAcgGCGGcCGUcgGCGGCaCCGAg -3'
miRNA:   3'- aCGCUugUGUC-GCGuaCGUCGgGGCU- -5'
12957 3' -57.7 NC_003387.1 + 30959 0.67 0.500051
Target:  5'- cGCGAACAgcGCGUcgGUGGCgCUGAc -3'
miRNA:   3'- aCGCUUGUguCGCGuaCGUCGgGGCU- -5'
12957 3' -57.7 NC_003387.1 + 17872 0.67 0.500051
Target:  5'- uUGCGcuCACGGCa---GCAGCCCCu- -3'
miRNA:   3'- -ACGCuuGUGUCGcguaCGUCGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.